PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768741.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 1106aa    MW: 122460 Da    PI: 6.4151
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.66.1e-20132232198
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++ yr++++r++lt+GW+  v+ ++L +gD+v+F +d++++
  XP_009768741.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNVWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQ 225
                     99*****************************9777766.49************************************************665555 PP

                     E..EEEEE- CS
              B3  90 felvvkvfr 98 
                     f   +++++
  XP_009768741.1 226 F--QLGIRK 232
                     5..888776 PP
2Auxin_resp119.52.7e-39258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sd+dpvrW+nS+Wr+L+
  XP_009768741.1 258 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDMDPVRWKNSQWRNLQ 341
                     79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-41122261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-38126247IPR015300DNA-binding pseudobarrel domain
CDDcd100175.67E-18131232No hitNo description
PROSITE profilePS5086311.194132234IPR003340B3 DNA binding domain
SMARTSM010194.5E-21132234IPR003340B3 DNA binding domain
PfamPF023621.3E-17132233IPR003340B3 DNA binding domain
PfamPF065071.6E-34258341IPR010525Auxin response factor
PROSITE profilePS5174527.5669941078IPR000270PB1 domain
PfamPF023092.1E-69971079IPR033389AUX/IAA domain
SuperFamilySSF542772.06E-610111072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MKTPVNGAGA GTQQASGNED EKKRINPELW QACAGPLVNL PVAGTHVVYF PQGHSEQVAA  60
SIKKDVEAQV PNYPNLPSKL ICLLHNVTLH ADPETDEVYA QMTLQPVPSF DKEALLRSDL  120
SMKVNKPQPE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDYSLQPPAQ ELVARDLHDN  180
VWTFRHVYRG QPKRHLLTTG WSLVVSGKRL FAGDSVLFIR DEKHQFQLGI RKANRQPTNL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRAGPSE FVIPLAKYYK ATYSSQVSLG  300
MRFRMMFETE ESGTRRYMGT ITGISDMDPV RWKNSQWRNL QVGWDESTAG ERINRVSIWE  360
IEPITAPFLI CSSPFFSSKH PRQPGMPDGD CSDMDGVFRR TMPWLGDDFG MTDPQGLPGL  420
SLVQWMNMQK NPSLTNPMMS NYLNSLSGSV LQNLAGADLS RQLGLAAPQL QQQHNLQFNT  480
QRPNQQGQQL EQLQKLPAAT LNSLDSIMQS QQQLYDISQQ PRQNSTNQSL PTSQVQAQLL  540
QAQSLVQSQN VLPSQQSIQN QLQRNLPQSL PQQQPQQQIL GQSQQQNFMS SQPPDPVNQH  600
HFSENQAQFQ LLQKLHQQQK SLLAQQSALQ QSSHLGSIQD QQKQFLDASQ NFSRSLATSQ  660
MLDASQTTST STSLSHSQVV QQQMTRTNSQ SNLRFVQPTQ QPKLQQQQQQ YGILPDLSGP  720
VGYSLPRTTY QLATNGSSLT RTAGGGQPVM DEVPSWSTSV STNNCQNVVQ QNLNGRIHES  780
TGVRDETTHY SGPLLNSSGL EVMSANSNLV KELQQKNDVK PSINVSKNQN HGFLAPQTLN  840
TAGHTLDYLD SSSSATSACL SQNDVQLQQA TDPPLSSSSH PLIFRDSPDG EVQGDSRNDI  900
GFGANMENQL GLPMMPDPLI TKSLMGSRKD FSDNLSSGGG MLSSYENPKE AQPELLASMA  960
SEYMTFNSID STINDGNFMD RGAWDPPPQL PRMRTYTKVY KRGAVGRSID IGRYSGYEEL  1020
KLDLARRFGI EGQLEDRQRV GWKLVYVDHE NDVLLVGDDP WEEFVSCVRC IKILSPQEVQ  1080
QMSLDGDFGG NVLQHQACSS SDAGGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1652136247388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM5651300.0HM565130.1 Solanum lycopersicum auxin response factor 19-1 (ARF19-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768741.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A1U7VUV40.0A0A1U7VUV4_NICSY; Auxin response factor
STRINGXP_009768741.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19