PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009768682.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 331aa MW: 37705.7 Da PI: 7.9755 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 7.7e-09 | 88 | 112 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f++ GtC+ G+ C+FaHg XP_009768682.1 88 FKTRMCAKFLE-GTCRNGEHCTFAHG 112 69*********.*************9 PP | |||||||
2 | zf-CCCH | 25.8 | 1.9e-08 | 148 | 170 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yGd+C+F H XP_009768682.1 148 MKICKKFYNGEECPYGDKCNFLH 170 579******66************ PP | |||||||
3 | zf-CCCH | 36.3 | 9.4e-12 | 223 | 249 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C+ + tG+C++ drC+FaHg+ XP_009768682.1 223 WKTKMCSKWETTGQCPFRDRCHFAHGQ 249 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-14 | 84 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 85 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0011 | 87 | 113 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-6 | 88 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.089 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0027 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-8 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-6 | 148 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-17 | 218 | 255 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-10 | 221 | 253 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.07 | 222 | 250 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-4 | 222 | 249 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 223 | 249 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MSYSDPPPPP PPFMPMPFAG GDIGEAWPQS PMNHEFPESY SQFDHVPPFK RLRNSDNNSP 60 NSANYTPMNS RVNQLNLIGN KGTSHIFFKT RMCAKFLEGT CRNGEHCTFA HGVEDLREPP 120 PNWQELVREK DRGVVGNWND DQKIIHRMKI CKKFYNGEEC PYGDKCNFLH ERPPKFKTDI 180 PRQRESSAIS IGTTANRSDL EQNEISKHGI ADSDAVRIKP VYWKTKMCSK WETTGQCPFR 240 DRCHFAHGQS ELQAPSGPDL LTNPVPIMPR PFSVPLVELS SANAAVNASI QEEKEDKKIL 300 KWKLTKKIYR IYADWIDDLV PPHLLASKAE S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768675.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_009768682.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Refseq | XP_016481777.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like | ||||
Refseq | XP_016481778.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like | ||||
Refseq | XP_016481779.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q9LT81 | 5e-76 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A1S4AZ34 | 0.0 | A0A1S4AZ34_TOBAC; zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A1U7W330 | 0.0 | A0A1U7W330_NICSY; zinc finger CCCH domain-containing protein 39 | ||||
STRING | XP_009768675.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 9e-70 | C3H family protein |