PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009767530.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 599aa    MW: 69144.6 Da    PI: 8.0203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009767530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-141694999
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k++ l +pk f+ ++ +g ++e     +  +  + W vk+  + +     +++GW eF+k+n+L+ gD++vF+++g++ef   v++f++
  XP_009767530.1 16 PGFKHA-LKIPKGFL-KYlKGHEHE---HAVLRRADKYWLVKV--NAY----RFKAGWAEFAKENDLQLGDILVFRYEGNMEF--EVMIFDS 94
                    456666.********.564666444...56777899*******..555....5**************************9999..8999886 PP
2B352.49.9e-17194275590
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +++++ l+ g l+lp +fa+  ++k  ++  l+++de+ r W++kl+ + +++r+ +++GW++F  +n+LkegD +vF+++ ++e+
  XP_009767530.1 194 TIKPYCLTYGYLYLPQQFANGLSNK--KG-NLIIRDERQRLWNLKLS-SDYKKRVRIGDGWRKFIADNRLKEGDRIVFEVVTDEET 275
                     578999999*********9555444..33.6999************6.6666799************************8876544 PP
3B347.53.1e-15349429589
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +++++ l+ g l+lp +fa+  + +ke+  +l+++de+ r W++kl+ + +++r+ +++GW++F  +n+Lk gD ++F+++ ++e
  XP_009767530.1 349 TIKPYCLTYGYLYLPQPFANGLS-NKEC--DLIIRDERQRLWNLKLS-SDCKNRVRIGDGWRKFIVDNRLKKGDRIMFEVVTDEE 429
                     578999999*********94443.3344..8***************5.7788889************************876543 PP
4B3612e-19486575597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     ++++++ +++r+ +pk fa+e+g+++++  t++++d + rsWe++l y+ + g++++++ W++F+ an LkegD ++F+    +++++ +k++
  XP_009767530.1 486 TVKPHHISKCRMHVPKLFARENGLSNRQ-CTIVIRDYEQRSWEFRL-YSSCAGSTFIGGEWRKFCAANFLKEGDCIMFEIFA-KGEKPILKFY 575
                     56899999**************999765.6****************.9999999*************************544.7777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-21497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20797IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.675795IPR003340B3 DNA binding domain
CDDcd100178.50E-16893No hitNo description
SMARTSM010193.0E-141095IPR003340B3 DNA binding domain
PfamPF023628.9E-111994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-18188280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-17188280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.437190286IPR003340B3 DNA binding domain
CDDcd100172.27E-12190268No hitNo description
SMARTSM010193.5E-12191283IPR003340B3 DNA binding domain
PfamPF023621.9E-14194275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-16343428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-15343430IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.59345440IPR003340B3 DNA binding domain
CDDcd100171.17E-11345423No hitNo description
SMARTSM010193.1E-8346437IPR003340B3 DNA binding domain
PfamPF023623.1E-13349429IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-19479573IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464482580IPR003340B3 DNA binding domain
CDDcd100175.71E-18482576No hitNo description
SuperFamilySSF1019361.1E-18482574IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-13483578IPR003340B3 DNA binding domain
PfamPF023629.6E-18486575IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MKVRPVKPHF FKPILPGFKH ALKIPKGFLK YLKGHEHEHA VLRRADKYWL VKVNAYRFKA  60
GWAEFAKEND LQLGDILVFR YEGNMEFEVM IFDSSHCNRE YAEYLQEEEA AATHTFGEAS  120
KNFEFEDTNN YASIPSGDQL YESSPSMSCY LIHSRNTDDV IEIPSPGIKL SDEDSSHAEA  180
ASDKHVGHSH FVCTIKPYCL TYGYLYLPQQ FANGLSNKKG NLIIRDERQR LWNLKLSSDY  240
KKRVRIGDGW RKFIADNRLK EGDRIVFEVV TDEETSIWKF HVVTNAKTPM RKFQGGHGLE  300
PWKQPLAEIP SPDNVVEIPS PGIKSSDEDS SHAETATDKH VGHSHFVCTI KPYCLTYGYL  360
YLPQPFANGL SNKECDLIIR DERQRLWNLK LSSDCKNRVR IGDGWRKFIV DNRLKKGDRI  420
MFEVVTDEES IWKFHAVTNA ETPMRKFQAN ATEKPEPNIM SSYKAFPDVE AAKDMPLSHP  480
DHFISTVKPH HISKCRMHVP KLFARENGLS NRQCTIVIRD YEQRSWEFRL YSSCAGSTFI  540
GGEWRKFCAA NFLKEGDCIM FEIFAKGEKP ILKFYDLRAN ASLQPEEWKP NLDAKRVST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767530.10.0PREDICTED: B3 domain-containing protein REM9-like isoform X1
RefseqXP_009767531.10.0PREDICTED: B3 domain-containing protein REM9-like isoform X1
RefseqXP_016504087.10.0PREDICTED: B3 domain-containing protein REM9-like isoform X1
RefseqXP_016504088.10.0PREDICTED: B3 domain-containing protein REM9-like isoform X1
TrEMBLA0A1S4CSK80.0A0A1S4CSK8_TOBAC; B3 domain-containing protein REM9-like isoform X1
TrEMBLA0A1U7VZV00.0A0A1U7VZV0_NICSY; B3 domain-containing protein REM9-like isoform X1
STRINGXP_009767530.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-43B3 family protein