PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009765230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 249aa MW: 28504.2 Da PI: 8.0427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.5e-11 | 129 | 151 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++ +tG+C yGd CkF H+ XP_009765230.1 129 DICKDYKETGYCGYGDACKFLHD 151 58********************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 4.84E-9 | 123 | 156 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 125 | 153 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-7 | 125 | 152 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-11 | 126 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-9 | 129 | 151 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 1.3E-9 | 186 | 235 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.17E-9 | 202 | 229 | No hit | No description |
CDD | cd00162 | 6.21E-4 | 203 | 229 | No hit | No description |
PROSITE profile | PS50089 | 8.816 | 203 | 240 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 218 | 227 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MKKKPAIAGF STGPPKCNKA PLFYFESPKE ITVQNDSRAT ASLETETEFS KDARAIRERV 60 LKLGEEALKG KSKSSADDKL YKGMNQYTDY KAGLRREHTI SSEKACGAHG PLRASAHIRV 120 STRFDYHPDI CKDYKETGYC GYGDACKFLH DWGDYKAGWQ LEKEWEEAAK ERKRKLAMGM 180 LNEDDEDAEK SDEDDDDSLP FACFICRQPF VDPIVTKCKH YFCAHCALKS PQPRPPRKEC 240 QRVERVRWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 5e-53 | 36 | 229 | 113 | 288 | RING finger protein 113A |
5z58_M | 5e-53 | 36 | 229 | 113 | 288 | RING finger protein 113A |
6ff4_t | 5e-53 | 36 | 229 | 113 | 288 | RING finger protein 113A |
6ff7_t | 5e-53 | 36 | 229 | 113 | 288 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009765230.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X3 | ||||
Swissprot | Q8GX84 | 1e-108 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A1U7VTH9 | 0.0 | A0A1U7VTH9_NICSY; zinc finger CCCH domain-containing protein 1-like isoform X3 | ||||
STRING | XP_009765228.1 | 1e-170 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-100 | C3H family protein |