PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009765124.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 890aa MW: 99890.4 Da PI: 8.7779

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009765124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.5e-06	188	208	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f + G C++G+ C+F H+ XP_009765124.1 188 VCRNFTA-GNCRRGSDCRFFHP 208 6****.*********998 PP
2	zf-CCCH	19.4	1.9e-06	270	293	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +t +Cr+f + G C+ G++C+F+H+ XP_009765124.1 270 GTIICRDFVK-GNCRWGASCRFSHD 293 5779****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.15	183	210	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.8E-5	185	209	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	186	207	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.32	189	208	No hit	No description
Gene3D	G3DSA:4.10.1000.10	3.0E-6	263	293	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.9E-5	268	294	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-5	268	293	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.713	268	295	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.54	273	292	No hit	No description
SMART	SM00356	0.6	319	344	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.098	319	345	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.013	325	342	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 890 aa Download sequence Send to blast
MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SGWSCGDNVT GTEELRKENY 60 HYKSMSPAFD RWGRRSSSHS PNNGRTQSRR YPERARSRSR SRSRSRSRAR GEGRSRSRSR 120 GRDRFRGWTR SRSRSKSRDR DQDRDRDRDR DRGSMRVQNR SRSPLHNSKR DPYASGDRRS 180 GPRMSSQVCR NFTAGNCRRG SDCRFFHPDA INHRDGGHSE GNLVERLGSR PERGHVSRYA 240 DSEGPGYQSR DRLPDMHHLE DEMHRNRNRG TIICRDFVKG NCRWGASCRF SHDGASGDSY 300 DKGTRSASID HGQDNQASRT GKSLCKYFAA GKCYKDNCKF SHDATSRNHE IRPSDDIGGH 360 RLDDKNNWLK GPKWDDEGRP SDLVKASGWD EGRPSDHVKA SGWDEGRPSD HVKSSGWDES 420 GVRKDTAVTV LTDRTNERLD HSFENESRAW GSTEPHYMNS DGERGVSPHG GNAGNLNALN 480 ISEPSVMQKL TNAQAIHLTS QASDQNMERT SAHVLGHNSN PEASGIILSA TATQPYGSAS 540 SYIQPQGLTE DSIARTLGSN ALNEFMHARD GLHQVHLPGQ SFSGTGIGMS SEHSAALNGT 600 HQEPNVFIPI PSTGHNKREA PSTPEMLEFK VPQNISCTVT GEQVHQMKTS PTSMIKKFEE 660 ELQEAQLQRV LNPSDPSGML ASHPISSLVN AIYGQTNLEM RGPNNYHPAD GVDNFKMPPD 720 NSSYLDRESN KVPEEQMNQS STVDPEPGNK DQIDDVKQQE NKLVEVNGKD KLAPEESKDG 780 QENDHPGDMN MHGKVEEGSG NKDEKTMRLF KNALIEFVKE ILKPTWKEGK MSREVHKTVV 840 KKVVDKVTST TQGEHVPKTQ EKIEQYLSYS KAKITKLVQA YVERLLKNEA

Sequence ? help Back to Top

Protein Sequence Length: 890 aa Download sequence Send to blast

MGESAKRRKS LWDAEETPNS PDYEEWGASK ADNSWQSKNN SGWSCGDNVT GTEELRKENY  60
HYKSMSPAFD RWGRRSSSHS PNNGRTQSRR YPERARSRSR SRSRSRSRAR GEGRSRSRSR  120
GRDRFRGWTR SRSRSKSRDR DQDRDRDRDR DRGSMRVQNR SRSPLHNSKR DPYASGDRRS  180
GPRMSSQVCR NFTAGNCRRG SDCRFFHPDA INHRDGGHSE GNLVERLGSR PERGHVSRYA  240
DSEGPGYQSR DRLPDMHHLE DEMHRNRNRG TIICRDFVKG NCRWGASCRF SHDGASGDSY  300
DKGTRSASID HGQDNQASRT GKSLCKYFAA GKCYKDNCKF SHDATSRNHE IRPSDDIGGH  360
RLDDKNNWLK GPKWDDEGRP SDLVKASGWD EGRPSDHVKA SGWDEGRPSD HVKSSGWDES  420
GVRKDTAVTV LTDRTNERLD HSFENESRAW GSTEPHYMNS DGERGVSPHG GNAGNLNALN  480
ISEPSVMQKL TNAQAIHLTS QASDQNMERT SAHVLGHNSN PEASGIILSA TATQPYGSAS  540
SYIQPQGLTE DSIARTLGSN ALNEFMHARD GLHQVHLPGQ SFSGTGIGMS SEHSAALNGT  600
HQEPNVFIPI PSTGHNKREA PSTPEMLEFK VPQNISCTVT GEQVHQMKTS PTSMIKKFEE  660
ELQEAQLQRV LNPSDPSGML ASHPISSLVN AIYGQTNLEM RGPNNYHPAD GVDNFKMPPD  720
NSSYLDRESN KVPEEQMNQS STVDPEPGNK DQIDDVKQQE NKLVEVNGKD KLAPEESKDG  780
QENDHPGDMN MHGKVEEGSG NKDEKTMRLF KNALIEFVKE ILKPTWKEGK MSREVHKTVV  840
KKVVDKVTST TQGEHVPKTQ EKIEQYLSYS KAKITKLVQA YVERLLKNEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RSRSRSRGR
2	115	125	RSRSRGRDRFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765123.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 55-like
Refseq	XP_009765124.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 55-like
TrEMBL	A0A1U7VRW5	0.0	A0A1U7VRW5_NICSY; zinc finger CCCH domain-containing protein 55-like
STRING	XP_009765123.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-13	C3H family protein