PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009764774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 126aa MW: 14406.6 Da PI: 8.343 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.4 | 9.2e-12 | 17 | 90 | 9 | 94 |
HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +k+g + +p +f ++ + ++++ + + g++ vk+ +++ +l++GW +F+++++L+ gD +vFk++g++efe v XP_009764774.1 17 PGFKHG-IKIPIPFS-KYlN---GCNQEHAILRRAGKKSVVKV--NGR----LLEEGWGKFAEEHDLQLGDCLVFKHEGNMEFE--V 90 556665.99999998.6732...35567788899*********..555....6************************9999994..4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-18 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-18 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.81E-12 | 9 | 93 | No hit | No description |
SMART | SM01019 | 8.0E-11 | 11 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-9 | 19 | 89 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.361 | 59 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MMKIPPKKPH FFKPILPGFK HGIKIPIPFS KYLNGCNQEH AILRRAGKKS VVKVNGRLLE 60 EGWGKFAEEH DLQLGDCLVF KHEGNMEFEV SNFGSSKCER EYEQPLQGVS EGEEERDHSC 120 KKITPL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009764774.1 | 1e-88 | PREDICTED: B3 domain-containing protein REM5-like, partial | ||||
Swissprot | Q9SB80 | 2e-23 | REM5_ARATH; B3 domain-containing protein REM5 | ||||
TrEMBL | A0A1U7VQY7 | 3e-87 | A0A1U7VQY7_NICSY; B3 domain-containing protein REM5-like | ||||
STRING | XP_009764774.1 | 5e-88 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 6e-19 | B3 family protein |
Publications ? help Back to Top | |||
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