PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009761173.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 462aa    MW: 52310.7 Da    PI: 8.6523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009761173.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-051032123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+ksF++  +L  H+r+H
  XP_009761173.1 10 HVCKFCNKSFNSGRSLGGHMRSH 32
                    79********************9 PP
2zf-C2H213.90.0001692110321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C+ CgksF ++  L  H++
  XP_009761173.1  92 CKECGKSFQSWKALFGHMK 110
                     ******************7 PP
3zf-C2H211.20.0012370392123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k Fs+   L  H r+H
  XP_009761173.1 370 HECPICFKIFSSGQALGGHKRSH 392
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.7E-4932IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-101032No hitNo description
SMARTSM003550.00361032IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-91033IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0141032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576672.0E-1085112No hitNo description
PROSITE profilePS5015710.11890117IPR007087Zinc finger, C2H2
SMARTSM003550.009590112IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-891114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-8307331No hitNo description
SMARTSM003550.093309331IPR015880Zinc finger, C2H2-like
PfamPF139122.7E-11309332IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785309336IPR007087Zinc finger, C2H2
PROSITE patternPS000280311331IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-8365392No hitNo description
SMARTSM003550.22370392IPR015880Zinc finger, C2H2-like
PfamPF139129.2E-10370393IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203370392IPR007087Zinc finger, C2H2
PROSITE patternPS000280372392IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGEDQEILKH VCKFCNKSFN SGRSLGGHMR SHMINSTDGN TTRKMLPNLD MSTEAGNQSV  60
NYVLRENPKK TSKFTGSSEE DTLLQNQKNK ICKECGKSFQ SWKALFGHMK CHSERISSIN  120
NSVEQDSWNS ANTNQKQVMD SQSDTETATP NKKKRSSRKM KRYMATTTSS SLTIAYNASP  180
CISEIEHDQL QEEVAMSLIL LSKDMGNWVG QNHVIECSDN NYQPHQNDKD GELVKLKMVK  240
NGKTEQGESS KSNGQKRDKS QVPTDDEKKK KIKVDNENRF VKESEVEFAI KLVKGSDFTE  300
DFNSKKKKFE CTICNKNFHS YQALGGHRAS HKNIENKGVD HIKLIKNCSS ESAINEKIET  360
NSGSKKLKNH ECPICFKIFS SGQALGGHKR SHLIADAKRH NNQAVEIVQK PVPEIRNFLD  420
LNLPAPVEEE NMFDSSSENI GFQQWWMENS HKHEQLLGLI SN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761173.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1U7V4490.0A0A1U7V449_NICSY; zinc finger protein ZAT1-like
STRINGXP_009761173.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-26C2H2-like zinc finger protein