PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009760677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 29537.5 Da PI: 6.4003 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.5 | 1.8e-21 | 13 | 141 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rFhPt+ el+ ++Lk+ ++g+ l+ e ++ +diy Pw++ + + +eek y F++ +k++++ +r +r ++g+Wk + +++ XP_009760677.1 13 MGVRFHPTEAELI-NFLKRFLKGELLPSECPnFQLADIYGDqPPWEIFgAsDHPEEEKVRYIFTRLKKQKSEHTRVRRNCANGTWKGQTGIFPIK 106 7************.9*********977755459999***87368***7322333455566**************************88888**** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kg++vg ++ + f + ++++ ++ W+m+ey++ XP_009760677.1 107 NGKGTVVGFRRCFKFQTSSKEREHNKIWLMKEYSV 141 *9**************9999999**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-26 | 2 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.808 | 11 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-14 | 13 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSMVPAARSG CIMGVRFHPT EAELINFLKR FLKGELLPSE CPNFQLADIY GDQPPWEIFG 60 ASDHPEEEKV RYIFTRLKKQ KSEHTRVRRN CANGTWKGQT GIFPIKNGKG TVVGFRRCFK 120 FQTSSKEREH NKIWLMKEYS VGDDFFKENN IPKEDIVVCR IKKNIRAEKN HGVTMEEQDV 180 PKVIEAMLHG PDEVYGTTIL QPATTCQAAE HQVMDETQKM NEQNNNNNDC SYYQQETNWA 240 DDLLIRIDDF GDIIW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU753260 | 0.0 | EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009760677.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A1U7UXB3 | 0.0 | A0A1U7UXB3_NICSY; NAC domain-containing protein 78-like | ||||
STRING | XP_009760677.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 7e-16 | NAC domain containing protein 2 |