PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009630818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 239aa MW: 27970.9 Da PI: 6.7595 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.6 | 4.8e-23 | 12 | 139 | 3 | 127 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +G+rFhPt+ el+ ++Lk+ ++g++ l++ ++ +diy Pw++ + ++ eek yfF++ +k++++ +r +r+ ++g+Wk + ++++ XP_009630818.1 12 MGVRFHPTEVELI-NFLKRFLKGEPlLSECPNFQLADIYGDqPPWEIFGTSDHlEEKVRYFFTRLKKQKSEHTRVRRTCANGTWKGQTGIDPIKN 105 7************.9**********53443559999***87368***743333266677**************************888889**** PP NAM 95 kkgelvglkktLvfykgrapkgektd.Wvmheyr 127 kg++vg ++ + f + r+++ge+ + W+m+ey XP_009630818.1 106 GKGTVVGFRRCFKFQTSRSKEGEHNKiWLMKEYF 139 9**************999999986544******6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-27 | 8 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.168 | 10 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-15 | 12 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MSTLPVRRGC IMGVRFHPTE VELINFLKRF LKGEPLLSEC PNFQLADIYG DQPPWEIFGT 60 SDHLEEKVRY FFTRLKKQKS EHTRVRRTCA NGTWKGQTGI DPIKNGKGTV VGFRRCFKFQ 120 TSRSKEGEHN KIWLMKEYFV GDDFFREYNI PKEDIVVCRI KKNIRSKKNY GVNMEEQDVP 180 KVIEAMLHEK DEDYCTTVQP TPICQAEHQV NDCSNYQEEI NWADDVLLDI DDFGNIICC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU753260 | 0.0 | EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016515059.1 | 1e-175 | PREDICTED: protein SOMBRERO-like | ||||
TrEMBL | A0A1S4DPJ8 | 1e-173 | A0A1S4DPJ8_TOBAC; protein SOMBRERO-like | ||||
STRING | XP_009630818.1 | 1e-180 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04410.1 | 3e-17 | NAC domain containing protein 2 |