PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009627678.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 30231.4 Da PI: 6.1777 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.1 | 3.4e-23 | 17 | 145 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +++rFhPt+ el+ ++Lk+ ++g++l+ e ++ +diy Pw++ ++ + eek +yfF++ +k++++ +r +r+ ++g+Wk + ++++ XP_009627678.1 17 MCVRFHPTEAELI-NFLKRFLKGEPLPSECPnFQLADIYGDqPPWEIFgASDHPEEKVCYFFTRLKKQKSEHTRVRRTCANGTWKGQTGIDPIKN 110 579**********.9**********88755559999***87368***733333466788**************************888889**** PP NAM 95 kkgelvglkktLvfykgrapkgektd.Wvmheyrl 128 kg++vg ++ + f + r+++ge+ + W+m+ey++ XP_009627678.1 111 GKGTVVGFRRCFKFQTSRSKEGEHNKiWLMKEYSV 145 9**************999999986544******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-26 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.34 | 15 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-14 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MTIYTMSTLH VRRGCIMCVR FHPTEAELIN FLKRFLKGEP LPSECPNFQL ADIYGDQPPW 60 EIFGASDHPE EKVCYFFTRL KKQKSEHTRV RRTCANGTWK GQTGIDPIKN GKGTVVGFRR 120 CFKFQTSRSK EGEHNKIWLM KEYSVGDDFF RKNNIPKEDI AVCRIKKNIR GEKNHGVTME 180 EQDVAKIIEA MLHEPDEDYC ITVQPAPICH AEHQVMDETQ KMNEHNNSSY INDCSNYQEE 240 INWADDVLLD IDDFVDIICC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU753260 | 0.0 | EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009627678.1 | 0.0 | PREDICTED: protein SOMBRERO-like | ||||
TrEMBL | A0A1S4CNS0 | 0.0 | A0A1S4CNS0_TOBAC; protein SOMBRERO-like | ||||
STRING | XP_009627678.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-17 | NAC domain containing protein 2 |