PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009626542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 46841.9 Da PI: 8.3222 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.4e-11 | 42 | 67 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p XP_009626542.1 42 GEPDCSYYIRTGLCRFGSTCRFNHPP 67 6899********************97 PP | |||||||
2 | zf-CCCH | 37.7 | 3.4e-12 | 90 | 112 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCk+G++CkF+H++ XP_009626542.1 90 ECQYYLKTGTCKFGATCKFHHPR 112 7********************96 PP | |||||||
3 | zf-CCCH | 34.3 | 4.1e-11 | 135 | 158 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rt +Ck+G++CkF+H++ XP_009626542.1 135 NECTYYMRTAQCKFGSTCKFHHPE 158 68********************96 PP | |||||||
4 | zf-CCCH | 37.9 | 2.9e-12 | 288 | 313 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_009626542.1 288 GQPECQFYMKTGDCKFGAVCRFHHPR 313 5799********************96 PP | |||||||
5 | zf-CCCH | 37.3 | 4.6e-12 | 333 | 359 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ XP_009626542.1 333 PGEPMCIFYSRYGICKFGPSCKFDHPM 359 57899********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.483 | 40 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-5 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-8 | 42 | 67 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 45 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-4 | 46 | 66 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.92 | 85 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-5 | 85 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 89 | 114 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 90 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-5 | 91 | 112 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.986 | 131 | 159 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 131 | 158 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-6 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-9 | 134 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 137 | 157 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.967 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-5 | 286 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.24E-5 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.7E-9 | 289 | 313 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-5 | 292 | 316 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 335 | 359 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 335 | 359 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-4 | 337 | 357 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MDISMSEGPP SLSPSLRQDS LWQMNLRSME SMESGPYPVR EGEPDCSYYI RTGLCRFGST 60 CRFNHPPNRK LALAAASMNG EYPERIGQLE CQYYLKTGTC KFGATCKFHH PRDKAGIAGR 120 VTLNVLGYPL RPNENECTYY MRTAQCKFGS TCKFHHPEPS NMMVSSRGSP VYPPGPSPTT 180 PGQMSYPLSR ASFISGARWQ GSSSYAPLPV LQGVVSFPGF TYNGQLGAVS SAEDQQQTAG 240 NNQVYGSSRS SDKATMGSEG MNSSYRASSL PVGYYALEGE NVFPERLGQP ECQFYMKTGD 300 CKFGAVCRFH HPRERLLPPP DCLLSPIGLP LRPGEPMCIF YSRYGICKFG PSCKFDHPMR 360 VFTYNISASS STDDPSVRRL LGSSSGTGAL TLTSEGIVEA ASTTPRRLSL SETRKMPPGD 420 NNFDREG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626542.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Refseq | XP_016437918.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_016437919.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_016437920.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_016437921.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_016437922.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S3XDR5 | 0.0 | A0A1S3XDR5_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_009626542.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-169 | zinc finger protein 1 |