PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009625395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 38214.9 Da PI: 8.7817 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.7 | 2.7e-50 | 35 | 170 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPtdeelv++yLk+kve+kk+++ + ikevdiyk++PwdLpk +v + kewyfFs r +ky+++ r+nr+t sg+Wkatg dk+++s XP_009625395.1 35 LPGFRFHPTDEELVSFYLKRKVENKKIKI-DLIKEVDIYKHDPWDLPKgnTVGDNCKEWYFFSMRGRKYRNSVRPNRVTGSGFWKATGIDKPIYS 128 59***************************.99***************5335555667************************************** PP NAM 95 k........kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_009625395.1 129 SttttsqstDRECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 170 9776655544445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-52 | 32 | 201 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.483 | 34 | 202 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-25 | 36 | 170 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MSEKRAEKIE NMELVENISA NTNIKAEDEE EMMQLPGFRF HPTDEELVSF YLKRKVENKK 60 IKIDLIKEVD IYKHDPWDLP KGNTVGDNCK EWYFFSMRGR KYRNSVRPNR VTGSGFWKAT 120 GIDKPIYSST TTTSQSTDRE CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPNWKTSNQQ 180 LPNPKNIIPE AEVWTLCRIF KRTSNYKRFT PDWKQPVIKQ SFGDASSKAC SLQSETSDDH 240 SININFNKME FPHKKNNTAT GGNYQVDQKT THYQNSQPII TMPQSSITSS NSSFWNTSAE 300 EEYLFSDGNW DELKSVVDLA IDPRSLFGFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 21 | 208 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 21 | 208 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 21 | 208 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 21 | 208 | 1 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-48 | 21 | 208 | 1 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 21 | 208 | 1 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 3e-49 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009625395.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Swissprot | Q9SK55 | 1e-89 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1S4B245 | 0.0 | A0A1S4B245_TOBAC; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_009625395.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 1e-86 | NAC domain containing protein 42 |