PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009623743.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 483aa    MW: 54345.9 Da    PI: 8.6955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009623743.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-051032123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+ksF++  +L  H+r+H
  XP_009623743.1 10 HVCKFCNKSFNSGRSLGGHMRSH 32
                    79********************9 PP
2zf-C2H214.30.0001291110221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C+ CgksF ++  L  H++
  XP_009623743.1  91 VCKECGKSFQSWKALFGHMK 110
                     6******************7 PP
3zf-C2H211.10.0012391413123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k Fs+   L  H r+H
  XP_009623743.1 391 HECPICFKIFSSGQALGGHKRSH 413
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-4932IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.18E-101032No hitNo description
SMARTSM003550.00361032IPR015880Zinc finger, C2H2-like
PfamPF139127.4E-91033IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0141032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-1085112No hitNo description
PROSITE profilePS5015710.22190117IPR007087Zinc finger, C2H2
SMARTSM003550.007890112IPR015880Zinc finger, C2H2-like
PfamPF139122.0E-892114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM003550.063318340IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596318345IPR007087Zinc finger, C2H2
PfamPF139125.0E-12318341IPR007087Zinc finger, C2H2
SuperFamilySSF576677.52E-8318340No hitNo description
PROSITE patternPS000280320340IPR007087Zinc finger, C2H2
SuperFamilySSF576677.52E-8386413No hitNo description
PROSITE profilePS501579.203391413IPR007087Zinc finger, C2H2
SMARTSM003550.22391413IPR015880Zinc finger, C2H2-like
PfamPF139129.7E-10391414IPR007087Zinc finger, C2H2
PROSITE patternPS000280393413IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGEDQEILKH VCKFCNKSFN SGRSLGGHMR SHMINSTDGN TTRKMLPILD MGTEAGTQSA  60
NYVLRENPKK TSKFAESSEE DTLLPNQKNK VCKECGKSFQ SWKALFGHMK CHSERISSIN  120
NSVEQDSWNS ANANQKQVMD SQSDTETAAP NKKKRSTRRL KRYMATTTSS SLTVAYNASP  180
CISEIEHDQL QEEVAMSLIL LSKDVGSWVG QNHVTECSDN NYQPHQNDKV GNKSTKCKDG  240
ELVKLRKVKN GKTEQGESSK SNGQKRDKSQ VPTDDEKKKK IKVDNENRVV EEFEVEFANK  300
LVKRSDLTEG FNSKKIKFEC TTCNKSFHSY QALGGHRASH KNIKGENSSI DIEHLQNKGV  360
DHIKLIKNCS SESAINEKIE TNSGSKKLKN HECPICFKIF SSGQALGGHK RSHLIAEAKR  420
NNNQAVEIVQ KPIPEIRNFL DLNLPAPVEE ENMLDSSSEN IGFQQWWMEN SHKHEQLLGL  480
ISN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151160KKKRSTRRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-43HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009623743.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016438592.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S3XFD40.0A0A1S3XFD4_TOBAC; zinc finger protein ZAT9-like
STRINGXP_009623743.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-33C2H2-like zinc finger protein