PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009619423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 28151.3 Da PI: 7.1968 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.2e-05 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F+++ L H++ H XP_009619423.1 95 YECQYCFRNFPTSQALGGHQNAH 117 99******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.95E-6 | 92 | 122 | No hit | No description |
Pfam | PF13912 | 1.1E-5 | 95 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.323 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDKTEREAVD FMNVETFSQL IPFIRPPPPP VKEKPIRLFG KELEGGRNAT TTTDMSESID 60 SNPFHDEPEI ITANPVNYAY KESHIGNNEE SNKKYECQYC FRNFPTSQAL GGHQNAHKRE 120 RQNAKRAHLQ SALAHEANIY GIMNHHRLGE PAAPSTTRYS TWNNINNSTR SYGNHHVISP 180 YSQTPINRNP LAFWRIPPAV HQNFSSNLVF PNDDLKPFPT VKSPNCDSTF GYEPKGGVQD 240 HLSLDLHL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619423.1 | 0.0 | PREDICTED: zinc finger protein 8-like | ||||
TrEMBL | A0A1S3X5B9 | 0.0 | A0A1S3X5B9_TOBAC; zinc finger protein 8-like | ||||
STRING | XP_009619423.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1473 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41940.1 | 1e-39 | zinc finger protein 8 |