PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009619149.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 385aa MW: 39573.7 Da PI: 6.7435

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009619149.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	7.9e-12	194	239	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq XP_009619149.1 194 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 239 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.2E-16	187	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.53E-13	187	243	No hit	No description
PROSITE profile	PS50888	17.193	189	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-16	191	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-9	194	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-13	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MQATNSQMSL QEENGASSGQ NMSHSHFDPM SSHDDFLQQI LSSVPSSSPW PDLSGGGDGH 60 FDDQSIFLAS KLRQNQITGG GGAAAKALML QQQLLLSRGL LAGNGDQNDD VGNPGNEISV 120 QALYNGFAAS LGQTSNQPQH FHHAQGGSMQ TQSFGAPASS IMNQTPAASG GSGGGGQPKQ 180 QKVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE IIDYVRFLQL 240 QVKVLSMSRL GGAAAVAPRV ADRSSEGGGG DSAQANGGGR GSNGTTSLAN NDSMTMTEHQ 300 VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCHST KPNNPLLHGG GSGGSTAING 360 GGGGPSSPSL SASTVQSATM GNGGA

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MQATNSQMSL QEENGASSGQ NMSHSHFDPM SSHDDFLQQI LSSVPSSSPW PDLSGGGDGH  60
FDDQSIFLAS KLRQNQITGG GGAAAKALML QQQLLLSRGL LAGNGDQNDD VGNPGNEISV  120
QALYNGFAAS LGQTSNQPQH FHHAQGGSMQ TQSFGAPASS IMNQTPAASG GSGGGGQPKQ  180
QKVRARRGQA TDPHSIAERL RRERIAERMK SLQELVPNAN KTDKASMLDE IIDYVRFLQL  240
QVKVLSMSRL GGAAAVAPRV ADRSSEGGGG DSAQANGGGR GSNGTTSLAN NDSMTMTEHQ  300
VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCHST KPNNPLLHGG GSGGSTAING  360
GGGGPSSPSL SASTVQSATM GNGGA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	203	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619149.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	2e-88	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1J6IF69	0.0	A0A1J6IF69_NICAT; Transcription factor bhlh66
STRING	XP_009619149.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-67	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]