PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009618593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 457aa MW: 50157.8 Da PI: 5.1789 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.5e-11 | 387 | 432 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L A +YIk+L+ XP_009618593.1 387 SIAERVRRTRISDRMRKLQDLVPNM----DKQTNTADMLDFAADYIKELE 432 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.488 | 381 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-15 | 384 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.21E-11 | 385 | 436 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-14 | 386 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-12 | 387 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-8 | 387 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPTAVVS GGGNCGYARD DFDQLLNSRA 60 SNTDDVKQVF DRFVANIDPQ DSNPNNGLIG DTQQIQQNHM SNMNVRSEGV APTKQEHEQS 120 QARQSQNSQF IAAVKQETQQ NSDYSLASQM NYQTQAQQND NSDLTSAMDN FARFLGAADS 180 NRLNQTKMDG GFGAGSSNSN LTRYNSSPAG FFAQFDIENE YGAMRGIGGY GAGGNAAAEA 240 SFPTPNRFSS QTALQSGQPP SSGLLAPISV FGAKSIEEGR AGDESFGKGH KNDESYMTVF 300 PMPSWDDSQM LTDDFLQVPE DNEAEPFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL 360 SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISDR MRKLQDLVPN MDKQTNTADM 420 LDFAADYIKE LETQVKALSE RRSKCTCSNK IEDHIQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 1e-110 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618594.1 | 0.0 | PREDICTED: transcription factor bHLH122-like | ||||
Refseq | XP_009618595.1 | 0.0 | PREDICTED: transcription factor bHLH122-like | ||||
TrEMBL | A0A1S3X0U3 | 0.0 | A0A1S3X0U3_TOBAC; transcription factor bHLH122-like | ||||
STRING | XP_009618593.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 1e-51 | bHLH family protein |