PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009611997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21372.3 Da PI: 8.6861 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 235.5 | 1.2e-72 | 9 | 166 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+ q l+ ++ +++ ++ e++ s+ ++s++++++ + XP_009611997.1 9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQDL-QKQQ----RQQSSIIEDA--SKACGSSSSTNYHRFS 96 689***************************************************9993.3332....2222222222..3334455666677777 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_009611997.1 97 AIATTPEDDQPRTMP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 166 778888888999888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.6E-75 | 10 | 166 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.8E-9 | 105 | 159 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.7E-5 | 114 | 160 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQKQQ RQQSSIIEDA SKACGSSSST NYHRFSAIAT TPEDDQPRTM PIRPPEKRQR 120 VPSAYNRFIK EEIQRIKASN PDISHREAFS TAAKNWAHFP HIHFGLKLEG NKQAKLDHAV 180 AGEGPQKSIG LY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611997.1 | 1e-144 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 8e-76 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1J6KYN5 | 1e-132 | A0A1J6KYN5_NICAT; Putative axial regulator yabby 2 | ||||
STRING | XP_009611997.1 | 1e-143 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-72 | YABBY family protein |
Publications ? help Back to Top | |||
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