PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009609923.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 562aa MW: 64620.2 Da PI: 5.5453

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.7	8.3e-20	428	501	1	72
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnk..rykkikegekkrt 72 rW++ ev aLi++r+++e+++++ k+ lWee s+ m++ gf+rs+ +Ckekwen++k k++ke+ +++ XP_009609923.1 428 RWPQAEVEALIQIRNSLESKFQEVGPKGVLWEETSNSMASMGFQRSARRCKEKWENMHKcsTVKRTKEITREQL 501 8********************************************************98444677777776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.725	421	485	IPR017877	Myb-like domain
CDD	cd12203	3.84E-22	427	486	No hit	No description
Pfam	PF13837	2.2E-13	427	487	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MQSDYEMAGI HHQRNRNQQP QVEQQQQQQH RFIMENASTS SPFFPINYNH HFPPQQPNPL 60 LQPFTQQFFQ YQHLHYRSIL EQQQHQDIRL ELNAEGENHQ VQDVSAQFFP LSFKEDSVSK 120 GEREEDALIR GSEGYCNEAR QTSLAVSHCW QNQEDSAIKQ PFWKPLCAEF SNGNNNNSNE 180 SEKNKQEEDQ EMYPEEIHQQ QIIKSLEENK CRVVFGELEA IYATNADNTN TTPNIHRIAS 240 ESVLTAEDLP INNNNNVSFP VATFNDSNQT SGPTAIATTT AAAIDIGSES ASVGEATRED 300 EVHNKRKRRR KAKEGTSTTM ARFFESLVKK LVNHQEDLQK RFMETIERLD QERKEREETW 360 REQELAKLKK EAAVRAQERT LASNREAALV SYLEKLTGQK INFQHGSELP IKNEDRSCSS 420 LAKLNNKRWP QAEVEALIQI RNSLESKFQE VGPKGVLWEE TSNSMASMGF QRSARRCKEK 480 WENMHKCSTV KRTKEITREQ LNDGNNSIDF VTQGNDIVDD HLATVNLTEG NKGNSEKVKH 540 GNGESKNGNW KEEMEEIKEG EI

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MQSDYEMAGI HHQRNRNQQP QVEQQQQQQH RFIMENASTS SPFFPINYNH HFPPQQPNPL  60
LQPFTQQFFQ YQHLHYRSIL EQQQHQDIRL ELNAEGENHQ VQDVSAQFFP LSFKEDSVSK  120
GEREEDALIR GSEGYCNEAR QTSLAVSHCW QNQEDSAIKQ PFWKPLCAEF SNGNNNNSNE  180
SEKNKQEEDQ EMYPEEIHQQ QIIKSLEENK CRVVFGELEA IYATNADNTN TTPNIHRIAS  240
ESVLTAEDLP INNNNNVSFP VATFNDSNQT SGPTAIATTT AAAIDIGSES ASVGEATRED  300
EVHNKRKRRR KAKEGTSTTM ARFFESLVKK LVNHQEDLQK RFMETIERLD QERKEREETW  360
REQELAKLKK EAAVRAQERT LASNREAALV SYLEKLTGQK INFQHGSELP IKNEDRSCSS  420
LAKLNNKRWP QAEVEALIQI RNSLESKFQE VGPKGVLWEE TSNSMASMGF QRSARRCKEK  480
WENMHKCSTV KRTKEITREQ LNDGNNSIDF VTQGNDIVDD HLATVNLTEG NKGNSEKVKH  540
GNGESKNGNW KEEMEEIKEG EI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	309	KRKRRR
2	304	310	KRKRRRK
3	305	309	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609923.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Refseq	XP_016436030.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A1S3X7P1	0.0	A0A1S3X7P1_TOBAC; trihelix transcription factor GT-2-like
STRING	XP_009609923.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11622	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-34	Trihelix family protein