PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 626aa MW: 71313.1 Da PI: 4.9408 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 597 | 615 | 2 | 20 |
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cg+ F ++ +L++H+ XP_009595027.1 597 SCETCGEEFDTRNQLHKHL 615 6*****************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 4.19E-23 | 4 | 93 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 1.1E-22 | 4 | 81 | IPR001623 | DnaJ domain |
SMART | SM00271 | 5.4E-21 | 7 | 69 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.882 | 8 | 77 | IPR001623 | DnaJ domain |
CDD | cd06257 | 1.89E-17 | 8 | 66 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 2.4E-20 | 9 | 74 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 4.9E-14 | 10 | 28 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 4.9E-14 | 28 | 43 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 4.9E-14 | 49 | 69 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 54 | 73 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 9.97E-13 | 293 | 337 | No hit | No description |
SMART | SM00451 | 4.1E-5 | 297 | 331 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12171 | 4.1E-10 | 300 | 325 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 1.7 | 300 | 324 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 302 | 324 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.556 | 596 | 625 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4 | 596 | 620 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 598 | 620 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MASSEKRCLY EVLGVNRDCT PDEIRSAYRR LALQRHPDKL VKSGVPESEA TAAFQELVNA 60 YEVLSDARER AWYDSHRSQI LFSSNSGPTN SSNSGSVPDL FSFFSNSVYS GYSDKGKGFY 120 KVYGDLFEKI YQNDLNFART LGIGFPKEAP LMGNLDSPYA QVTAFYNYWL GFVTVMDFCW 180 VDQYDVMAGP NRKSRRVMEE ENKKLRKKAR REYNETVRGL AEFVKKRDKR VIDMQMKRNE 240 EMERKREKER ERKEELEREK VEKAKKYVEP DWAKAEELEN EEIEEEWDED GKKKADENEL 300 YCVVCSKKFK SEKQWKNHEQ SKKHKEKVAA LREAFDDEDC EYEGLVEDGV SEEQKVADGD 360 RTSDLSADDG VDELAEQFEG STRIQEDERE DDEVQSSNED ETTSQGLDDG LNYRSGSDSK 420 VVADELGLDD DEASVLEAMV SGRKSRKNAG PAGSRQISAK NVKGETSNEE MDFMEYNNLR 480 STRRNRGGRR QRNRRPQEEE DEEGGGGDVR SYATKVGVNT ELDSAYNESS AFQEPSSESP 540 AETANDHKGS DLSRNSEKVS SQGMDKKTTA KKEKNTKSKD ATKGRKQKGT SKFSSNSCET 600 CGEEFDTRNQ LHKHLGATGH AKLKSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 210 | KKLRKKARR |
2 | 482 | 495 | RRNRGGRRQRNRRP |
3 | 483 | 494 | RNRGGRRQRNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595027.1 | 0.0 | PREDICTED: DNAJ protein JJJ1 homolog | ||||
Swissprot | Q9C911 | 0.0 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | A0A1S4CXW4 | 0.0 | A0A1S4CXW4_TOBAC; DNAJ protein JJJ1 homolog | ||||
STRING | XP_009595027.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6110 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-147 | DNAJ heat shock N-terminal domain-containing protein |