PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009592442.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 439aa    MW: 49550.7 Da    PI: 5.8858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009592442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13268315254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+++N++f  Lr+++P+      ++++Ka+ L  Av YI++L
  XP_009592442.1 268 QMNHVEVERQRREKLNHRFYALRSVVPQV-----TRMDKASLLSDAVAYINEL 315
                     689*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-102772IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142156.9E-2773163IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.72E-18258327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-14264319No hitNo description
PROSITE profilePS5088817.13266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-17266320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-11268315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNEVIFPATS SFSTPALISQ ENQPSTLQQK LKYILNSQTD SWAYTIFWQT SNEDNNGSLL  60
LTWGDGHFQG TNKDIEWFYV LSLAQSYSVN EGVIGKVFST ATFVWLTGAQ QVQFCSCERA  120
KEAQNNGVKT LVYVSISNGV LELGSSDIIK EDWSLVQQVK SLFSSDQENG PIYNFLDQNT  180
IYFANIDLVT GLQEDGQESE NNSNKNQESK LKKFEEVATT SHVSFPDSEL SASDCQLLEH  240
PVQKSRVGSK KRTYKKRGRK PGEDCDKQMN HVEVERQRRE KLNHRFYALR SVVPQVTRMD  300
KASLLSDAVA YINELKAKVD KLESKLHRNL ELKKKLQMES NDAVDNQSST NSVDLTLEVE  360
VKMVGPNAMI RVQSENANYP STRLMCALQD LELHVHHASI SSVNNILLQN IVIRVPKELK  420
TEDGLRAALL RSLEQIEAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-22261638192Transcription factor MYC3
4rqw_B5e-22261638192Transcription factor MYC3
4rs9_A5e-22261638192Transcription factor MYC3
4yz6_A5e-22261638192Transcription factor MYC3
5gnj_A7e-23269337772Transcription factor MYC2
5gnj_B7e-23269337772Transcription factor MYC2
5gnj_E7e-23269337772Transcription factor MYC2
5gnj_F7e-23269337772Transcription factor MYC2
5gnj_G7e-23269337772Transcription factor MYC2
5gnj_I7e-23269337772Transcription factor MYC2
5gnj_M7e-23269337772Transcription factor MYC2
5gnj_N7e-23269337772Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592442.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1S3ZE820.0A0A1S3ZE82_TOBAC; transcription factor MYC2-like
STRINGXP_009592442.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.12e-53bHLH family protein