PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009591286.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 310aa MW: 35564.3 Da PI: 8.3532

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009591286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.7	3.2e-51	26	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yL++kve++++++ e ik++diyk++PwdLpk+ + ++kewyfF+kr +ky+++ r+nr+t+sg+Wkatg d++++s+ XP_009591286.1 26 MLPGFRFHPTDEELVGFYLRRKVEKRPVTI-ELIKQIDIYKYDPWDLPKSSNMGDKEWYFFCKRGRKYRNSIRPNRVTSSGFWKATGIDRPIYSS 119 579**********************999.89***********988999************************************9 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e +glkk+Lv+y+g+a kg+ktdW+mhe+rl XP_009591286.1 120 vgqgrRHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 157 887766667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-55	23	188	IPR003441	NAC domain
PROSITE profile	PS51005	54.381	26	188	IPR003441	NAC domain
Pfam	PF02365	1.0E-25	28	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEVENLSCIV TISSYKEEEA DEEDVMLPGF RFHPTDEELV GFYLRRKVEK RPVTIELIKQ 60 IDIYKYDPWD LPKSSNMGDK EWYFFCKRGR KYRNSIRPNR VTSSGFWKAT GIDRPIYSSV 120 GQGRRHECIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPAE NDKSTKHIEA KSIAQEAEVW 180 TLCRIFKRNG SYRKCLPEWR SVAAAKRHPT DTSSKTCSAD SSDYIISFGA PVMRPHNNIT 240 EIKPFSGHVH DISNNSQLLM GQLSSVRQAP SVSHSSYGHT LAPDMNELLL KHGDWDELTS 300 FLDLAVDPLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-49	28	194	22	174	NAC domain-containing protein 19
3swm_B	2e-49	28	194	22	174	NAC domain-containing protein 19
3swm_C	2e-49	28	194	22	174	NAC domain-containing protein 19
3swm_D	2e-49	28	194	22	174	NAC domain-containing protein 19
3swp_A	2e-49	28	194	22	174	NAC domain-containing protein 19
3swp_B	2e-49	28	194	22	174	NAC domain-containing protein 19
3swp_C	2e-49	28	194	22	174	NAC domain-containing protein 19
3swp_D	2e-49	28	194	22	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591286.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Refseq	XP_016500749.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	5e-88	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1S4CIB0	0.0	A0A1S4CIB0_TOBAC; transcription factor JUNGBRUNNEN 1-like
STRING	XP_009591286.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-90	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]