PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009589888.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 42503.1 Da PI: 6.6246 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00053 | 79 | 101 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H XP_009589888.1 79 CSydGCGKTFIDAGALRKHSHIH 101 78889**************7766 PP | |||||||
2 | zf-C2H2 | 16.5 | 2.4e-05 | 106 | 130 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H XP_009589888.1 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP | |||||||
3 | zf-C2H2 | 22.4 | 3.3e-07 | 136 | 160 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cgk Fs nL++H++tH XP_009589888.1 136 YVCPheGCGKAFSLDFNLRSHMKTH 160 99**********************9 PP | |||||||
4 | zf-C2H2 | 16.3 | 2.8e-05 | 166 | 191 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp Cgk++ + + Lk+Hi + H XP_009589888.1 166 HICPypECGKRYAHEYKLKNHIASsH 191 679999****************9988 PP | |||||||
5 | zf-C2H2 | 16.1 | 3.1e-05 | 229 | 254 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+ks+ + + L+ H+r+ H XP_009589888.1 229 YSCPyeGCDKSYIHEYKLNLHLRNmH 254 99*********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-13 | 72 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0028 | 77 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 77 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.46E-8 | 80 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-14 | 104 | 126 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.921 | 106 | 135 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0024 | 106 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 108 | 130 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.99E-14 | 117 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-20 | 127 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.882 | 136 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7E-4 | 136 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-7 | 162 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.024 | 166 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 166 | 196 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 168 | 191 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.6E-5 | 223 | 251 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-9 | 223 | 251 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.344 | 229 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.2E-4 | 229 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 231 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
METHMAHHLF ERRPIYKSKA PAAKWFKEWV PQDVVATGGK CYLLKWVNEA TLKALKEKPK 60 EPEVPVPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS 120 SKLKRHFLIH TGERDYVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE 180 YKLKNHIASS HQKNSTPDAP KYTPPVEKPM KTPKSSSAAY ASSSSDRPYS CPYEGCDKSY 240 IHEYKLNLHL RNMHPGHFPE DNAKNAQSNA DNEMDEGSDQ DAYAAKRGNG KIQKQSRPKP 300 SLKQPALKVA RKSSSASPAN ISIAAKKPWS VKEENYHEED SEETEEERDD VGDGWRYGEN 360 DDDDDDEETE EDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 1e-33 | 79 | 189 | 8 | 119 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB017694 | 0.0 | AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009589888.1 | 0.0 | PREDICTED: uncharacterized zinc finger protein At4g06634 | ||||
Swissprot | Q2V3L3 | 1e-157 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | A0A1S3Y2F2 | 0.0 | A0A1S3Y2F2_TOBAC; uncharacterized zinc finger protein At4g06634-like | ||||
STRING | XP_009589888.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7343 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-136 | C2H2 family protein |
Publications ? help Back to Top | |||
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