PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587891.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 279aa MW: 31091.4 Da PI: 8.4621 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.0006 | 217 | 239 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ Fs+ L +H ++ H XP_009587891.1 217 QCPQCSLKFSSVAALISHVQKiH 239 7******************9988 PP | |||||||
2 | zf-C2H2 | 16.2 | 3e-05 | 251 | 273 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H XP_009587891.1 251 VCPRCSKGFRDPVSLVEHVEReH 273 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 6.54E-10 | 4 | 57 | No hit | No description |
PROSITE profile | PS51039 | 7.653 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.6E-9 | 11 | 53 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.013 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.9E-11 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.9E-10 | 91 | 148 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 2.75E-9 | 93 | 149 | No hit | No description |
PROSITE profile | PS51039 | 7.832 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.026 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 5.3E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.017 | 216 | 239 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.13E-5 | 217 | 269 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 218 | 239 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 250 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.2 | 250 | 273 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 252 | 273 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MGTPAFPNLG KHCFVDDCRL IDFLPFTCDC CHQVFCLDHR SYNRHHCPKA NKNDVTVVVC 60 PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKASKKRK CPVPGCREIL TFSNTIKCRE 120 CTIDHCLKHR FGPDHKCPGR KKPESAFQFM NFRTGNRKDE PKKPSATSSS SWATNLFKAA 180 EAGMSKLSSE FSQTLQMGKE GSSATNRNGS GSGQVEQCPQ CSLKFSSVAA LISHVQKIHE 240 KNGVMNLTVD VCPRCSKGFR DPVSLVEHVE REHRGTSKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-164 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587891.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q8VZ42 | 1e-118 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A1S4ADT7 | 0.0 | A0A1S4ADT7_TOBAC; zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like | ||||
STRING | XP_009587891.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5311 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-121 | C2H2 family protein |