PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009587104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GeBP | ||||||||
Protein Properties | Length: 430aa MW: 46626.9 Da PI: 4.7446 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 117.5 | 7.6e-37 | 97 | 197 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 klfqrlw++eDei lLqG++++++++g s ++d++afy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk+++f+++hdq +fe+ XP_009587104.1 97 KLFQRLWTDEDEIELLQGFLEYTTQRGGinssSHHHDTTAFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMSKMASGKDFVFKSSHDQATFEI 191 579***********************9877644555*********************************************************** PP DUF573 92 skkiWg 97 s+kiW XP_009587104.1 192 SRKIWS 197 *****6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.5E-34 | 99 | 197 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MASVEDQHNN PVYNDDDLDD DVVDEEDDDV DVDDDDDEDS TSSPPVPAPA PIDQQTVTIA 60 VVGVPAQRIN EFAAVTPPPA ATIVQEKKPS AIDDSRKLFQ RLWTDEDEIE LLQGFLEYTT 120 QRGGINSSSH HHDTTAFYDQ IKSKLQLDFN KNQLVEKLRR LKKKYRNVMS KMASGKDFVF 180 KSSHDQATFE ISRKIWSNAV PVVIRGGGSA AAAAAPPPPP PEDGGFDDED SHLNLNANFV 240 DHSHNGTKTP RSRKRSRGGA VKVEEKHGFI QHYYLPSPSG GGTNMSSPAP APAPAPAHAP 300 APAPAPGFTP FPMTAPQATA PPTTTAAVAA ATASIPSLIE ETVKSCLSPI FKELLNNVTN 360 LSGSRSFAFG TALSPIPLGF GSSGAMNSDM MADEKWRKQQ MLELEVYSRR LELVQDQIKA 420 QLEELRSMSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215352 | 6e-36 | AC215352.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0009K06, complete sequence. | |||
GenBank | AC215370 | 6e-36 | AC215370.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0056D15, complete sequence. | |||
GenBank | HG975441 | 6e-36 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 6e-36 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587104.1 | 0.0 | PREDICTED: probable transcription factor At3g04930 | ||||
TrEMBL | A0A1S3ZB35 | 0.0 | A0A1S3ZB35_TOBAC; uncharacterized protein LOC107784943 | ||||
STRING | XP_009587104.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4052 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 6e-53 | DNA-binding storekeeper protein-related transcriptional regulator |