PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009149649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 194aa MW: 22242.3 Da PI: 8.5207 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 7.2e-15 | 82 | 159 | 10 | 95 |
HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++ l++p f+++h +gk +++ t tl++ ++W+v + ++ lt+GWkeF++a++L+ gD+v+Fkl+g++ f +v+ XP_009149649.1 82 GFQTH-LTIPIVFFSKHiQGK-TNGNTWTLTSdAMDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLKGSMVF--HVT 159 55566.9**********7555.56668888874777*****99..7777....************************998888..665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.3E-21 | 67 | 166 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-20 | 69 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.196 | 72 | 164 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.05E-16 | 73 | 161 | No hit | No description |
SMART | SM01019 | 3.0E-18 | 75 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-10 | 85 | 156 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence Send to blast |
MVPIHFLKSP NQTRFPPIFG KPFPLLTLRR HNRGRSPLPP PATANSTEEE TPDQQRPIPP 60 IATQPKMVQP QEPHFFQPLL PGFQTHLTIP IVFFSKHIQG KTNGNTWTLT SDAMDQTWQV 120 IQEERRLTRG WKEFAEAHDL RIGDIVIFKL KGSMVFHVTP FGPSCCDIQY TYPNSMEEAH 180 DHQNNSKCDS KSPH |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009149649.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189599 | 0.0 | AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149649.1 | 1e-143 | PREDICTED: B3 domain-containing protein REM5-like | ||||
Swissprot | Q8H2D0 | 3e-44 | REM7_ARATH; B3 domain-containing protein REM7 | ||||
TrEMBL | A0A078ILG9 | 1e-135 | A0A078ILG9_BRANA; BnaA10g28180D protein | ||||
STRING | Bra036483.1-P | 1e-131 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16565 | 3 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31660.1 | 1e-46 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|