PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009148272.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 577aa    MW: 60913.6 Da    PI: 9.7995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009148272.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.68.8e-11204248144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++eEd  l+ avk++G g+W+ Iar     +Rt+ q+  rw
   XP_009148272.1 204 RQKWSAEEDADLIAAVKRFGEGNWAHIARGEFrGRRTASQLSQRW 248
                      89**************************96555799**9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.844199256IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-14199253IPR009057Homeodomain-like
SuperFamilySSF466892.44E-12201254IPR009057Homeodomain-like
SMARTSM007172.8E-8203254IPR001005SANT/Myb domain
PfamPF002491.8E-8204248IPR001005SANT/Myb domain
CDDcd116603.21E-13205253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MVESSSSNKR RKITISEGDI ASLLQRYDAK TILRLLQEMA FYSDVEKMDW NEMVRKTTTG  60
ITNAREYQML WRHLSYRDPL LHVVEDDAHP LDDDSDMECE LEASPEVSVE ASVEAVAHVK  120
VIAASYVPRN SDILDEATSE APLTINIPYA LPEGTQEPSE SPWLSRGMNI TFPVCLQKVT  180
STEGIINGNV SASSSSMPSQ RKTRQKWSAE EDADLIAAVK RFGEGNWAHI ARGEFRGRRT  240
ASQLSQRWPH LRRRYDTSTS ASQSQIAVNH ALSLALGNRP PSKKVAVGTQ GSGGRSSQGQ  300
QQSKAVVVQT LSRAETSGPA SKSQVGVNKT TARSTSRSDL MVTANSAAAA ACMGVVLTAP  360
SAPKVEVCVP RPTGSLVMPK VEPGKTVAAS SITKAVGPAS TRPLANGNLK PVTPSPSSIK  420
PPPLVGSRSE GFTMFSASTQ LATASKIVSN QRVVSASVPA TVLPLKPTAE TVICKPDGGH  480
KEQARGDGAS SVVAIQSNKM TSTNSEISRG KQAATHTQTA VLGADKTAVP SNSGAGSESK  540
SKCEVNNKVG GSVVTVSKAC GKPAEVAATV RGTGQGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.28140.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009148272.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148272.10.0PREDICTED: uncharacterized protein LOC103871745
TrEMBLM4DU050.0M4DU05_BRARP; Uncharacterized protein
STRINGBra019998.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein