PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009144966.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 340aa MW: 38635.5 Da PI: 6.5715

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009144966.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	172	191	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_009144966.1 172 FSCPLCFKTFNRYNNMQMHM 191 89*****************9 PP
2	zf-C2H2	13.1	0.00029	256	278	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ XP_009144966.1 256 FACRRCGKAFAVKGDWRTHEKNC 278 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	172	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.66	172	199	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	174	194	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.2E-5	242	276	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.22E-6	242	276	No hit	No description
PROSITE profile	PS50157	8.767	256	276	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MSNPACSNLF NNGFDNTNFN YSTSLSYIYN SQNSFYHPDT TNPNYMSPTT TTSTFPNSPP 60 LREALPLLSL SPIRHQEQHG QPCFLNTDNT TSSNFHDVTV DLHLGLPNYG DGGSYIAPEA 120 TTEEQDQDHD QEVEVTVESH LHDDDDHHED LYRGHHYWIP TPAQILIGPT QFSCPLCFKT 180 FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCFC CAPGCKNNID HPRAKPLKDF 240 RTLQTHYKRK HGSRPFACRR CGKAFAVKGD WRTHEKNCGK LWYCSCGSDF KHKRSLKDHV 300 KAFGNGHAPC GIDSFGGDHE DYYEAASDIE QQDDCNNNEC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00197	DAP	Transfer from AT1G51220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009144966.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311810	0.0	AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009144966.1	0.0	PREDICTED: zinc finger protein WIP5-like
Swissprot	Q8W031	0.0	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A3P5ZAQ2	0.0	A0A3P5ZAQ2_BRACM; Uncharacterized protein (Fragment)
TrEMBL	M4ENT0	0.0	M4ENT0_BRARP; Uncharacterized protein
STRING	Bra030450.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	1e-179	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]