PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 448aa    MW: 50378.9 Da    PI: 7.2492
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18e-102643011954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     F+   ++yp   ++e LAk++gLt++qV++WF N R +
  XP_009140780.1 264 FNHflHPYPRDLDKEMLAKQTGLTKSQVSNWFINARVR 301
                     5544589*****************************87 PP

2BELL107.11.1e-34143213272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     rqelq k+akL+s++e+V++ Ykqy++q+qtvissFe+ aglgsa++Yt++Al++iS++Fr++kd+i+ qi
  XP_009140780.1 143 RQELQLKRAKLISMVEKVEQIYKQYHDQMQTVISSFEQEAGLGSANSYTHMALQTISKKFRAVKDMICLQI 213
                     79******************************************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.8E-4579211IPR006563POX domain
PfamPF075261.6E-3390209IPR006563POX domain
PROSITE profilePS5007112.066242305IPR001356Homeobox domain
SMARTSM003892.3E-9245309IPR001356Homeobox domain
CDDcd000865.76E-12245306No hitNo description
SuperFamilySSF466892.95E-17246312IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27248311IPR009057Homeodomain-like
PfamPF059205.0E-18262301IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAVFFQGETE MREPSSDLFM VNLNPSPDQT MTINAHNNHF YNLCFAPQQH PQRMNKYEVL  60
DHIEQANCSA ISTVSNGRVT QSFRALAPTY LRVAQELLNE IVHVGHGSRG AKQEQQMNNE  120
SATCGLYNGV GNINGGPKSG VCRQELQLKR AKLISMVEKV EQIYKQYHDQ MQTVISSFEQ  180
EAGLGSANSY THMALQTISK KFRAVKDMIC LQIKHINNLL GEKECEGVSL AKQLGKMPDN  240
HSNAWRPQRG LPETAVSVLR AWLFNHFLHP YPRDLDKEML AKQTGLTKSQ VSNWFINARV  300
RVWKPMVEEM YLEEMNIEES RKGGNLSEHG NKGSSSKQLC NNTTSDESSN LILPAFHQGF  360
IENETSMQNS FSSCSVMTFG KQHVNQAKLI QFNGGFENYH AMVGNCVSLS LGMPHSCDQS  420
FNNIQFGSTS NETKISGIYP SLTYQNMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16251309563Homeobox protein Meis2
3k2a_B1e-16251309563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140780.10.0PREDICTED: BEL1-like homeodomain protein 5
RefseqXP_009140781.10.0PREDICTED: BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLA0A397ZQ440.0A0A397ZQ44_BRACM; Uncharacterized protein
TrEMBLM4EZU20.0M4EZU2_BRARP; Uncharacterized protein
STRINGBra034335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5