PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009140387.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 295aa    MW: 33583.7 Da    PI: 6.8756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009140387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-10119165455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  XP_009140387.1 119 EHVMAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRVKQLQ 165
                     699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15119183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-8119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-9120169No hitNo description
SuperFamilySSF474594.06E-15120179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDADFFSTDF SLENIDFDFN IHEEMNVTPV EASMHTQRAH YSSSFDHQMN LDFLKEKPKP  60
AVKEMMNINN KSRVISFDFS SNVSSSPAEE DIIMDRLVSC GSKRKACSSA TRSPVLAKEH  120
VMAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQIRK LKDEKEARRE  180
MESMILVKKS KMFFDEEPSS SSSSSCHAKF DQLLPEIEAK VVQKDVLIRI HCEKSKGCML  240
NILNTIENLQ LRIENSIVLP FGDSTLDITV LAQMEKDFSA SALKDLIRNL RLSMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
2124129RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009140387.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513976.10.0PREDICTED: transcription factor bHLH19
SwissprotQ1PF161e-161BH019_ARATH; Transcription factor bHLH19
TrEMBLM4EN380.0M4EN38_BRARP; Uncharacterized protein
STRINGBra030208.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-151bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]