PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009140061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 224aa MW: 24724.6 Da PI: 7.816 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.2 | 3.1e-30 | 43 | 117 | 4 | 74 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 ++++ +++h kv+gR+ RvRl+ +caar+F+L++eLG+++d++t++WLl+ a+p+i+ +tgt+ ++a+++ XP_009140061.1 43 QTKSRKDRHLKVEGRGGRVRLPPLCAARIFQLTRELGHKTDGETLQWLLRHAEPSIISATGTGIKPATDSvsqpP 117 67899*********************************************************8888855433322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-23 | 46 | 111 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.315 | 47 | 101 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDPNLLNPSE TETEVKKVLN NTVEGKRKWK QKEKKGKEGH EIQTKSRKDR HLKVEGRGGR 60 VRLPPLCAAR IFQLTRELGH KTDGETLQWL LRHAEPSIIS ATGTGIKPAT DSVSQPPPHA 120 VDLNLDGGSR SQLANGFWEN ETGFGIVGAN PTGGGFDLNC GIGFLGFDFN GSSDMGFENN 180 QMPQVGVLNP RIYQQIGQEH AKVLQHHYHH PHEAQQENAD KQGS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009140061.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140061.1 | 1e-167 | PREDICTED: transcription factor TCP6 | ||||
Swissprot | Q9FLM6 | 8e-66 | TCP6_ARATH; Transcription factor TCP6 | ||||
TrEMBL | M4E9S2 | 1e-165 | M4E9S2_BRARP; Uncharacterized protein | ||||
STRING | Bra025528.1-P | 1e-166 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15743 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41030.1 | 4e-68 | TCP family protein |
Publications ? help Back to Top | |||
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