PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009139354.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 594aa MW: 66514.5 Da PI: 7.3734

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009139354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C++ F ++ n++rH r+H XP_009139354.1 61 HKCDKCTREFCSPVNFRRHKRMH 83 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.97	61	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MELVKQEGND SLDMLIRRAV GKDPFFTFHR PENSPVQLFQ LLNTLERPGW PLLAPLKIQL 60 HKCDKCTREF CSPVNFRRHK RMHRPSRKPE MYSGKERDAL GAFWDELSAF DAKEILSLKN 120 MMLENVRGES VESGLISLIE NPGYTALPQY YLRAGSDLLD IIQGRPLRFP IYSNQLFSIL 180 DDASEKTFMT NEAASIQKYI FDGENGKNVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL 240 RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQRVKDQT KDAKEDESTT SEEQQQSPAE 300 SSRPLSVASD TEAQRSDSIP TEDSSSLEEP QVLEIDNERN GETQAPMVDG AGFGNGQNME 360 RRSGRREMER SQYGMPNGFH GNHAPKLGGM RKNGTNRDAR ANTTKVWSRK ADNPKSISPD 420 AVVAEPEQTK NSEVLIGSVS VTIGNSCLSG EHNQAKCSSE EEGRTKAVEA KPTSEQSTAE 480 VSRPVSSQGR KVSTSNGNTD KKDEHSSSTQ PEVKTANHIS LQFNNHEAKA FLAKRWKEAI 540 SAEHVTLVLS QETDMPGNNT HESSNGVITA ARPKHRMKPE KGANVKYVPK QKIP

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MELVKQEGND SLDMLIRRAV GKDPFFTFHR PENSPVQLFQ LLNTLERPGW PLLAPLKIQL  60
HKCDKCTREF CSPVNFRRHK RMHRPSRKPE MYSGKERDAL GAFWDELSAF DAKEILSLKN  120
MMLENVRGES VESGLISLIE NPGYTALPQY YLRAGSDLLD IIQGRPLRFP IYSNQLFSIL  180
DDASEKTFMT NEAASIQKYI FDGENGKNVL EAKNVVACAS FLLEQQLIKA WLADKDAEAL  240
RCQNLLVEEE EAAQRRQAEL LERKKRKKLR QKEQRVKDQT KDAKEDESTT SEEQQQSPAE  300
SSRPLSVASD TEAQRSDSIP TEDSSSLEEP QVLEIDNERN GETQAPMVDG AGFGNGQNME  360
RRSGRREMER SQYGMPNGFH GNHAPKLGGM RKNGTNRDAR ANTTKVWSRK ADNPKSISPD  420
AVVAEPEQTK NSEVLIGSVS VTIGNSCLSG EHNQAKCSSE EEGRTKAVEA KPTSEQSTAE  480
VSRPVSSQGR KVSTSNGNTD KKDEHSSSTQ PEVKTANHIS LQFNNHEAKA FLAKRWKEAI  540
SAEHVTLVLS QETDMPGNNT HESSNGVITA ARPKHRMKPE KGANVKYVPK QKIP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	261	268	ERKKRKKL
2	263	267	KKRKK
3	266	276	KKLRQKEQRVK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009139354.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009139354.1	0.0	PREDICTED: uncharacterized protein LOC103863353
TrEMBL	M4DBP3	0.0	M4DBP3_BRARP; Uncharacterized protein
STRING	Bra013903.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	0.0	C2H2-like zinc finger protein