PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009137070.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 274aa    MW: 30723.6 Da    PI: 7.4328
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009137070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000161131323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+ksF++   L  H+r+H
  XP_009137070.1 11 CQVCKKSFPNGRALGGHMRSH 31
                    ********************9 PP
2zf-C2H213.20.00026248270123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC++Cg++F +   L  H ++H
  XP_009137070.1 248 YKCEICGRVFGSGQALGGHKKVH 270
                     9*********9999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.847936IPR007087Zinc finger, C2H2
PfamPF139123.8E-9932IPR007087Zinc finger, C2H2
SMARTSM003550.17931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.62E-51034No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576673.05E-7205270No hitNo description
PfamPF139127.8E-11207231IPR007087Zinc finger, C2H2
SMARTSM003550.19207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
PfamPF139127.8E-10247270IPR007087Zinc finger, C2H2
SMARTSM003550.012248270IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.094248270IPR007087Zinc finger, C2H2
PROSITE patternPS000280250270IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MYSLLNETRN CQVCKKSFPN GRALGGHMRS HTRKISASNA ESATGSTVPT LKTLTKLAAN  60
IRPNETVLMR SVHTSEVGPE PDLKRGEGGQ QIKGKRKFVV DVDECPSSLT AVEECALCLV  120
AMSKGQRPEN SQNWNAIDRL LATPNEKEEY TRKSIDIDSD DDDREDKDKY VASNVRVLTE  180
DIDENEDEDD EDETYLVEKE NQCKKKFTCD ICGKVLHSYQ ALGGHRTSHR TKRLKICDKN  240
GQAMVRHYKC EICGRVFGSG QALGGHKKVH YVFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009137070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137070.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLM4D8Z30.0M4D8Z3_BRARP; Uncharacterized protein
STRINGBra012953.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.12e-66C2H2-like zinc finger protein