PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136032.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 269aa    MW: 29371.5 Da    PI: 6.7311
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-084466426
                    ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                    + C +f ++ +C+yG++CkF H+
  XP_009136032.1 44 PSCGNFKAYEFCNYGASCKFDHP 66
                    67********************9 PP
2zf-CCCH33.19.6e-116993226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +++ C +f ++G+C+yG++CkF H+
  XP_009136032.1 69 GQPSCGNFKAYGFCNYGASCKFDHP 93
                    7889********************9 PP
3zf-CCCH33.37.9e-11174198226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +f ++G CkyG++CkF H+
  XP_009136032.1 174 GQPACANFKAYGLCKYGASCKFDHP 198
                     5789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.33E-53968IPR000571Zinc finger, CCCH-type
SMARTSM003560.0414067IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.5024066IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-54466IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7276895IPR000571Zinc finger, CCCH-type
SMARTSM003560.0166894IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-86993IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-47392IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.075172200IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013173199IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8174198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5175198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4178197IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDLKLDMLCI SLFYCQQDLS VYFIGTNGAS GDTDDFAFVM LRQPSCGNFK AYEFCNYGAS  60
CKFDHPVPGQ PSCGNFKAYG FCNYGASCKF DHPVPVNPYH YAGLTMPSLP TALYSETIQH  120
PNIRRTLITT NTTAMSRLFL LDRFFHGMWL VSICGAASSD CTSSMACGWV GIMGQPACAN  180
FKAYGLCKYG ASCKFDHPVP VNPYQYAGFT MLYMPTAYAP PVSTQVRITS PPSLSDSTTV  240
SNGDKSAAEN KSSETEKQDE IAGLITKPL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136032.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487721e-27C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLM4CBU50.0M4CBU5_BRARP; Uncharacterized protein
STRINGBra001675.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3060922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.15e-30zinc finger nuclease 2