PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009136024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 261aa MW: 29121.6 Da PI: 7.7409 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.8 | 5.1e-13 | 66 | 110 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ I+r Rt+ q+ s+ qky XP_009136024.1 66 PWTEEEHRLFLVGLRKLGKGDWRGISRNYVMSRTPTQVASHAQKY 110 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.176 | 59 | 115 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.39E-16 | 61 | 114 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-17 | 62 | 113 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.7E-10 | 63 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-10 | 65 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-9 | 66 | 111 | No hit | No description |
Pfam | PF00249 | 3.7E-11 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MGNLSALAEH HRVSPSFPLA TGNHSDSPLS DHARYSNQDN EEYLSDEPAR GFGPIHRRVE 60 RKRGVPWTEE EHRLFLVGLR KLGKGDWRGI SRNYVMSRTP TQVASHAQKY FIRHTCSSRR 120 KRRSSLFDMV TDSSPTQEDT SSPSKELKNK TYLPSLELSL NNTTESEVVT TTAPPQGELE 180 EAIEPSNGLS TMLVPSGYFP PCFPVTCTIW LPASSTSLQG TEHSLEAETS SQQHHVLKPK 240 PGFAKERVNM DKMAGMSQVS I |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.22916 | 1e-114 | leaf| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009136024.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189218 | 0.0 | AC189218.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009136024.1 | 0.0 | PREDICTED: uncharacterized protein LOC103860178 | ||||
TrEMBL | A0A3P5ZVF4 | 0.0 | A0A3P5ZVF4_BRACM; Uncharacterized protein | ||||
STRING | Bo5g126180.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9313 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16350.1 | 1e-124 | MYB_related family protein |