PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134792.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CPP
Protein Properties Length: 521aa    MW: 57326.6 Da    PI: 4.7987
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134792.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.92.6e-15366404240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+C+Ck+s+Clk+YC+Cfaag +C e C+C++C+N+ 
  XP_009134792.1 366 SCKRCRCKRSRCLKLYCDCFAAGLYCVEPCSCQNCFNRP 404
                     589**********************************85 PP
2TCR444.3e-14452489239
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     +++gCnCkks C kkYCeC+  g+ Cs +C+C +CkN 
  XP_009134792.1 452 HMRGCNCKKSGCSKKYCECYLVGVGCSASCRCIGCKNI 489
                     889**********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.7E-16365406IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.799366491IPR005172CRC domain
PfamPF036386.6E-11368403IPR005172CRC domain
SMARTSM011145.6E-13451492IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-11454488IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDTPDKNRIS AVSYCNFEDS PVFQYINGLS PIEPVKADHA FHSLALASPS SLFSSPQIVC  60
IKRQDVLVQL KCSGPEEEMA NVSETEAFKE QVKVAIELAS SLRKGEDGCC SQMGSSDEVV  120
VPMDAENEVI KQSGELCRRI NELDADSDMV IQTEEMEAET GSGEQEIPNG KDSRICSFTV  180
VPQQFSYHSG NVVQPCSVQV AAGALDTTLS SLSNVAAFDS TAKAEDEEEI ELQRSSKQRS  240
VRRRCLTFDL GGSCKRIPLR DSTNDSPLDF TSINEAPTPQ SCLHSSKQET DEILPVPRTI  300
GLHLNALVNP YRNKFTAKDG CVLSHAAEEF TTPVSTIRDL VACDNQIMEE ASERSMEGEW  360
VEELGSCKRC RCKRSRCLKL YCDCFAAGLY CVEPCSCQNC FNRPIHEDIV IRSRRNVEAR  420
NPLAFAPKVV LTSASATYFG EESNKTPASA RHMRGCNCKK SGCSKKYCEC YLVGVGCSAS  480
CRCIGCKNIL CQTNEQFHLP CAVESDAVTI NEEAKDHCDY I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1736848912121Protein lin-54 homolog
5fd3_B2e-1736848912121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373RCRCKR
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009134792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893290.0AC189329.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134792.10.0PREDICTED: protein tesmin/TSO1-like CXC 4
SwissprotQ84JZ80.0TCX4_ARATH; Protein tesmin/TSO1-like CXC 4
TrEMBLM4CA990.0M4CA99_BRARP; Uncharacterized protein
STRINGBra001128.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148401620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.11e-160Tesmin/TSO1-like CXC domain-containing protein