PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131585.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 490aa    MW: 56259.7 Da    PI: 5.0166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.61.7e-5561331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k  + ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v 
  XP_009131585.1   6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVS 99 
                     79****************************.99***************6345667999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++++g+kktLv+y+grap+g +t Wvmheyrl
  XP_009131585.1 100 L-RDQAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133
                     *.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-634157IPR003441NAC domain
PROSITE profilePS5100561.1876157IPR003441NAC domain
PfamPF023652.8E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090602Biological Processsieve element enucleation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDQAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIII EAKPRSDQHQ QHHQPYVNTS  180
SNISGNSSFD ACSDFEISSS TLQVLPYNTA AAETQPRFGN TNAIGDHDGW SQYMAQGMHT  240
GFSNYGSPYG SYLTQPNVNT EIESGMLQHQ MSLPPLRVEG SPIQTSDFSN GTNQNSGQYG  300
FNDFTFAASN SNQLNNNNVD DHLIHIGSLD EQLLSAGNTT WMKKSDESLK QNFIEDEDIL  360
PSFEDNDQDL EYFDETRTNT INNIEIDDFF TLENQAEDTD KTTIEEDIRV EHKMLICTRQ  420
TTEVLYYQVV PSQILKIQIN PIQGIEERTM LIEEEGKDSW FKKAENVAKM KMKQIGLVTK  480
HYYKRLTIIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-55415715165NO APICAL MERISTEM PROTEIN
1ut4_B3e-55415715165NO APICAL MERISTEM PROTEIN
1ut7_A3e-55415715165NO APICAL MERISTEM PROTEIN
1ut7_B3e-55415715165NO APICAL MERISTEM PROTEIN
3swm_A4e-55415718168NAC domain-containing protein 19
3swm_B4e-55415718168NAC domain-containing protein 19
3swm_C4e-55415718168NAC domain-containing protein 19
3swm_D4e-55415718168NAC domain-containing protein 19
3swp_A4e-55415718168NAC domain-containing protein 19
3swp_B4e-55415718168NAC domain-containing protein 19
3swp_C4e-55415718168NAC domain-containing protein 19
3swp_D4e-55415718168NAC domain-containing protein 19
4dul_A3e-55415715165NAC domain-containing protein 19
4dul_B3e-55415715165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009131585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052381e-100AB005238.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKP11.
GenBankCP0026881e-100CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131585.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotQ9FFI50.0NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A397ZSY90.0A0A397ZSY9_BRACM; Uncharacterized protein
TrEMBLM4CQA30.0M4CQA3_BRARP; Uncharacterized protein
STRINGBra006392.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44111852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.10.0NAC domain containing protein 86
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]