PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009130421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 22172.5 Da PI: 9.666 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.8 | 3.8e-15 | 18 | 62 | 6 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + r++tfskR+ g++KK +E+ LC++e + ++fs +gk y+++ XP_009130421.1 18 YAARKITFSKRKSGLFKKMNEIVSLCNVETSFLVFSDSGKPYTFA 62 5679***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.292 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-17 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.55E-20 | 6 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-14 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-17 | 19 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-14 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.3E-14 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MRSTKGKQKI EMKKVGAYAA RKITFSKRKS GLFKKMNEIV SLCNVETSFL VFSDSGKPYT 60 FAYPSLEEAV GQFKNPLRHE PSATINTRPL VEAYKRQKNQ DLMERYMDLV EELEINNEKE 120 KILKKIIKEN KEKILWNIPP AECLSVEEKK WMRQTFVGLH VFLSDMALKC FGNDGDGSSS 180 SQESRGRDGE TYA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009130421.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130421.1 | 1e-143 | PREDICTED: MADS-box transcription factor 23 | ||||
Refseq | XP_013682785.1 | 1e-143 | MADS-box transcription factor 23-like | ||||
Refseq | XP_013731636.1 | 1e-143 | MADS-box transcription factor 23 | ||||
TrEMBL | A0A078IN90 | 1e-141 | A0A078IN90_BRANA; BnaA05g37450D protein | ||||
TrEMBL | A0A397ZN98 | 1e-141 | A0A397ZN98_BRACM; Uncharacterized protein | ||||
TrEMBL | M4ET15 | 1e-141 | M4ET15_BRARP; Uncharacterized protein | ||||
STRING | Bra031945.1-P | 1e-142 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 5e-45 | AGAMOUS-like 57 |