PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009126534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38501.9 Da PI: 4.9867 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.8 | 4.4e-49 | 22 | 147 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s XP_009126534.1 22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS- 114 69************************999.99***************778888999**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+tLvf+ grapkge+t+W+mhey + XP_009126534.1 115 SSQVIGTKRTLVFHIGRAPKGERTEWLMHEYCM 147 999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-54 | 11 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.465 | 21 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 23 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0034976 | Biological Process | response to endoplasmic reticulum stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEAEAMGGFK DTAASVEAAT VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPETDIYN 60 FEPWDLPDKS IVKSDTEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSSSQVIG 120 TKRTLVFHIG RAPKGERTEW LMHEYCMKGV SMDDALVVCR LRRNKEFHTS TSQKAPEPDL 180 PTEKHMVMQN GGAASSGSLT DWDSMVDFYL AGESGEELLN EMAETSKNLQ VQTEDDFFAD 240 ILKDEIINVD EAVTTGNIAN EVPTLESASK AIRVLPLPSM IDKQMASLLE ERPSEQKKCK 300 GSSGTDQLSS CFVGIYSIKT VNRARWDVII CLVALIVMFF CLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-41 | 23 | 174 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-41 | 23 | 174 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-41 | 23 | 174 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-41 | 23 | 174 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 23 | 174 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-41 | 23 | 174 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-41 | 23 | 174 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.31468 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009126534.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974764 | 0.0 | KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126534.1 | 0.0 | PREDICTED: NAC domain-containing protein 89-like | ||||
Swissprot | Q94F58 | 0.0 | NAC89_ARATH; NAC domain-containing protein 89 | ||||
TrEMBL | M4DUI9 | 0.0 | M4DUI9_BRARP; Uncharacterized protein | ||||
STRING | Bra020182.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4309 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22290.1 | 0.0 | NAC domain containing protein 89 |
Publications ? help Back to Top | |||
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