PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009122879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 384aa MW: 41321.7 Da PI: 8.1591 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 173 | 195 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_009122879.1 173 YQCKTCDRTFPSFQALGGHRASH 195 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 249 | 271 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H XP_009122879.1 249 HECGICGAEFTSGQALGGHMRRH 271 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-12 | 172 | 197 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.46E-6 | 172 | 195 | No hit | No description |
SMART | SM00355 | 0.028 | 173 | 195 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 173 | 200 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 175 | 195 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.46E-6 | 244 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.9E-4 | 247 | 273 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.5E-11 | 248 | 273 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.951 | 249 | 276 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.047 | 249 | 271 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 251 | 271 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
METAEEAISA AKAQALIIKG KRTKRQRPQS PIPFSIVPPM SSQEPDTQEE STSLVAKEKS 60 LNDEINYNNN KNDNNILSIG VTSSSSTSSS FNNATLKAAA DEEDQDMANC LILLAQGHSL 120 PHQQPQTRQL MVSYQESGNN NNNAYRSSSR RFLETSSSNG TTTSGGRAGY YVYQCKTCDR 180 TFPSFQALGG HRASHKKPKA APGLHDLKKS IYNDAVSHHL NNVLTTTPNN NNNHRSLVVH 240 GKANNNKVHE CGICGAEFTS GQALGGHMRR HRGAGVAATA TPTATLALPA SAATANTVLS 300 LSPMSFDQLS DGPVYPVQAP VKRARSAVVS LDLDLNLPAP EDENRVNGLS VASKQEHGHE 360 QTQGREEQKS IVLSSAPTLV DCYY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009122879.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122879.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
Refseq | XP_013646415.1 | 0.0 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A398AVP9 | 0.0 | A0A398AVP9_BRACM; Uncharacterized protein | ||||
STRING | Bo1g143860.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10470.1 | 1e-148 | C2H2 family protein |