PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009122040.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 309aa    MW: 34749 Da    PI: 4.785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009122040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12149192654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  A+eY+k+L
  XP_009122040.1 149 LMAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDAIEYMKEL 192
                     589*********************7.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.561143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-15147202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10149192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-15150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-5150192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDMEWTQISK QESNNHDDNY GDFFPSGRNL EYLCFNNPLQ EDVNNIDHTF SSLMDLISQP  60
PPLLHQPPQP SSSPTPFFSS SFDYPLPETL QDVTESPYYP PLGLSASQEG NNNDNSSPLV  120
EESKSFMSTG ETNKKMRNKK VVGQPSKNLM AERRRRKRLN DRLSMLRSIV PKITKMDRTS  180
ILGDAIEYMK ELLDKINKLQ ELGSNSDLKD SLTTNQSMVR NSPKFEVDRR EDNTHIDICC  240
STQPGLLLST VGTLEINLGL EIQQCVISCF SDFSLQATCS EVAGQRECIT SEDIKQALLK  300
NAGYGGRCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151158ERRRRKRL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in leaves and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009122040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009122040.10.0PREDICTED: transcription factor bHLH61
SwissprotQ9LXA91e-122BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A397XW200.0A0A397XW20_BRACM; Uncharacterized protein
STRINGBra009022.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.11e-117bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]