PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009121081.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 219aa MW: 25138.2 Da PI: 10.6108 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.7 | 6.2e-14 | 147 | 201 | 4 | 58 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++r +r++kNRe+A rsR+RK+a++ eLe + L++eN +Lk + e+++ ++a+ XP_009121081.1 147 DRRHKRMIKNRESAARSRARKQAYTNELELAISHLQKENARLKRQEEQMQLKMAE 201 799*************************************999887777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-12 | 139 | 201 | No hit | No description |
SMART | SM00338 | 1.0E-11 | 144 | 208 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.691 | 146 | 196 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-10 | 147 | 196 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.25E-10 | 148 | 199 | No hit | No description |
CDD | cd14707 | 1.68E-22 | 148 | 198 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 151 | 166 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MLSSAKHKIN HSDFSVSSSS SSLPHSYSQA KNMTQVTMEE VWKDINLASL HQHRQLNIDH 60 EPMLSNQNPN NSIFKDFLNK PLNQEPQPLP PSSSSSTLHR SLLPPPPPET VLSLNPHSIN 120 THFDESARFG CFGKKRGGQE SDESRGDRRH KRMIKNRESA ARSRARKQAY TNELELAISH 180 LQKENARLKR QEEQMQLKMA EATQHQTKRK LQRSWTTPF |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009121081.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121081.1 | 1e-161 | PREDICTED: bZIP transcription factor 27 isoform X1 | ||||
Swissprot | Q7PCC6 | 3e-83 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | A0A078GCZ8 | 1e-127 | A0A078GCZ8_BRANA; BnaA07g03000D protein | ||||
TrEMBL | A0A3P6BCR9 | 1e-127 | A0A3P6BCR9_BRACM; Uncharacterized protein | ||||
STRING | Bra002090.1-P | 1e-120 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 2e-68 | basic region/leucine zipper motif 27 |
Publications ? help Back to Top | |||
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