PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009120137.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 465aa MW: 51638.3 Da PI: 5.9424 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk+F++ L H r H XP_009120137.1 74 HICCECGKRFKSGKALGGHKRIH 96 68*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.56E-6 | 70 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.2E-5 | 71 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.19 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-7 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.954 | 126 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0056 | 128 | 149 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.05E-7 | 310 | 333 | No hit | No description |
SMART | SM00355 | 0.55 | 311 | 333 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 311 | 338 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.5E-10 | 311 | 335 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 313 | 333 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.05E-7 | 375 | 402 | No hit | No description |
SMART | SM00355 | 0.14 | 380 | 402 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.494 | 380 | 402 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-11 | 380 | 403 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 382 | 402 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 465 aa Download sequence Send to blast |
MDQCRFSLGR PRLGSIKFKV PKSSQPFISQ KRKEMEEEDQ AEEEAKSIGF REEEEDGEDD 60 DGAKSIEEEE EKKHICCECG KRFKSGKALG GHKRIHVLEA RKFSMVRPKM VAGAVGRSEE 120 RDDFEVDCCV CHKKFTSMKA LYGHMRFHPD RGWKGVLPPH HHHPLDHDGG EFISSDYDDD 180 DDGDGDYEDD DENSELWDNH WGLDNVVDLK DSIKGWAVTG KRGRRSALKD PPPEYVDAKD 240 LLFLATTAEA VDLDAAETCD SRSVEEMMKK RKKKRKRLSE MEKESTSSHD HHHQLEVGAA 300 EEGGGGAREK HVCVTCNKSF ASYQALGGHR ASHNKVRISE NHQARANSEA VLLGTEAMMA 360 GLATAQGPNT SLSIGNKGDH VCNICQKSFT TGQALGGHKR CHWPGPTSND AATAPVPASN 420 ESATTAPTPL VACSSSQVTE TVQEEKKLKR KFLEFDLNEL PPNEE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 268 | 272 | KKRKK |
2 | 268 | 276 | KKRKKKRKR |
3 | 270 | 276 | RKKKRKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009120137.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009120137.1 | 0.0 | PREDICTED: zinc finger protein ZAT4 | ||||
TrEMBL | M4CF54 | 0.0 | M4CF54_BRARP; Uncharacterized protein | ||||
STRING | Bra002836.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6618 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-132 | C2H2 family protein |