PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009120122.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 290aa    MW: 33353.3 Da    PI: 6.5102
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009120122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.42.4e-091813111128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
                     de ++ +yLk+ +++     +++ +++d+++ +P++       + +++ f + + +++a gk      + g W+   +dk ++++ +g+l g kk
  XP_009120122.1  18 DELMLLRYLKPMIDDGASWPQHFTEDADVFNKNPSKEF-----NPENTVFVIVNPRTEACGKTDG--CEYGSWRIMARDKLIKNEvTGKLLGFKK 105
                     5556789*****999996665779999*******8753.....3355666667777777665544..4689************9989999***** PP

             NAM 105 tLvfykgrapkge..ktdWvmheyrl 128
                     +L f  +++++g+  k +Wvm+e+rl
  XP_009120122.1 106 ILKFCVEKTKRGReyKRSWVMEEFRL 131
                     *****665555554499*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.9848146IPR003441NAC domain
SuperFamilySSF1019415.75E-1918144IPR003441NAC domain
PfamPF023657.4E-619131IPR003441NAC domain
PROSITE profilePS510059.064141288IPR003441NAC domain
SuperFamilySSF1019411.83E-13187286IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAAGDYFRIR DDLMGAGDEL MLLRYLKPMI DDGASWPQHF TEDADVFNKN PSKEFNPENT  60
VFVIVNPRTE ACGKTDGCEY GSWRIMARDK LIKNEVTGKL LGFKKILKFC VEKTKRGREY  120
KRSWVMEEFR LLNPKQDHVI CKIRLLFHAE IGFLLSKHFS YSSGPLPATQ SLPAYGYGFP  180
NPEYEGAYYL RSLGICIFTN RTEACGYTDG CDGGCWRTME GDKPIASIME GETFGYRRVF  240
KFCEADGTAK YSYTDPYGEV VFLTWIMEEY RLADEEMKDK VLCVIKLLPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009120122.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009120122.10.0PREDICTED: uncharacterized protein LOC103845045
TrEMBLA0A078FS830.0A0A078FS83_BRANA; BnaA06g25650D protein
TrEMBLA0A3P6CT450.0A0A3P6CT45_BRACM; Uncharacterized protein
STRINGBra002857.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60280.13e-93NAC domain containing protein 23