PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009119767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 877aa MW: 100637 Da PI: 4.3354 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 73.8 | 4.2e-23 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra......tksgyWkatgk 88 p+G rF+Pt+ lv+ +Lk+kve++ +ik++++y Pw L++ ++ +++ewy+F++r+ + + +r+ g+Wk+ gk XP_009119767.1 5 PRGSRFQPTELGLVKLHLKNKVEKNIS---GFIKTLNVYGDAPWLLHHDTNPlySRNEWYYFVPRKIRGVR--SVSRMvpsngdSLGGTWKSVGK 94 89********************99874...46**************85332233778*******9876553..33343222332559******** PP NAM 89 dkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 +k+++++++el+g k+ Lvf k+ + + ektdW m+ey+l XP_009119767.1 95 KKDIKKNDKELMGYKTELVFKKNvaGELEKEKTDWHMDEYSL 136 *********************7532445568*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-26 | 3 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.697 | 4 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 5 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MRTYPRGSRF QPTELGLVKL HLKNKVEKNI SGFIKTLNVY GDAPWLLHHD TNPLYSRNEW 60 YYFVPRKIRG VRSVSRMVPS NGDSLGGTWK SVGKKKDIKK NDKELMGYKT ELVFKKNVAG 120 ELEKEKTDWH MDEYSLHRNG DEFHDLVLCH VRLLHSDETF KPHVPAAHQV DHVKKDNNNN 180 NDVVLPNQEQ QEAGSAMQGY EGGNVNQPQQ QPEEQEDYIL VDRHLRSNHN QRQNLLEDVV 240 YPNGRGDFNQ HQQQQQDQED SLNLLHPPFQ TNVNQEHYPL GDIAYHNAEG DMTGYGLMPS 300 FNQGNDVNQQ QDSPDPLLLP PLQQSNDNQE PHPLDDIAFD DNLTIDIDEL LKILDEGKEQ 360 EDPPTLPLPP PLPSNVNQAP CLSWDTNFAP SQVENNYNNN TVLPNQEQRE GGFANHYDMT 420 MMVEKEHGDI KQQYQQELQQ IDRQSLFYDP EWDDLRFSSD LIMPNMDVSL TQQQLRELEE 480 ERLQLVQPVP QGQDSGVHAA QVMPPPPPQS NNNHGQRPLV PSQVESYNNN TVLPNQEQRE 540 GGFANHYDMT MMVEKEHGDI KQQYQQELQQ IDRQSLFYDP EWDDLRFSSD LIMPNMDVSL 600 TQQQLRELEE ERLQLVQPVP QGQDSGVHAA QVMPPPPPQS NNNHGQRPLV PSQVESYNNN 660 TVLPNQEQRE GGFANHYDMT MMVEKEHGDV KQDQEQRIKD LLSYLLSDDF GFDGPEDGPI 720 APELLKLLEP VPQAQDSEVM PPPPQSNDNH GQLPLVPSQV ENHNNTNVLP KQEQQEAGFA 780 YQNDMTMVAN EHGDVKQPQD QEQQHIDLQS LLRDPEWDDL RCDFGGPEVG LILQNMEVSM 840 TQQEEQEVQE EILKRMLEPV PQPQDSGVHA DQVMPKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009119767.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018510860.1 | 0.0 | PREDICTED: uncharacterized protein LOC103844301 | ||||
TrEMBL | M4EX70 | 0.0 | M4EX70_BRARP; Uncharacterized protein | ||||
STRING | Bra033406.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18837 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 6e-31 | NAC domain containing protein 6 |