PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009119702.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 270aa    MW: 31011.5 Da    PI: 9.9073
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009119702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.8e-144892147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_009119702.1 48 RENWTEQEHDKFIEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 92
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.39E-164298IPR009057Homeodomain-like
PROSITE profilePS5129415.7664397IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-74698IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-174695IPR006447Myb domain, plants
SMARTSM007172.0E-114795IPR001005SANT/Myb domain
PfamPF002495.3E-124892IPR001005SANT/Myb domain
CDDcd001674.67E-95093No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNMSLPGFST TLPHSKTTMP VSARSHTMSF SEDPTKKIRK PYTITKSREN WTEQEHDKFI  60
EALHLFDRDW KKIEAFVGSK TVIQIRSHAQ KYFLKVQKNG TNEHLPPPRP KRKANHPYPQ  120
KASKSVALTT SNALLEHEYL YPTDPQPVIS TPNHGLMRCN VITPIPVIKE ELGVLENCCS  180
TSRSRSIRDK MRTRTVTETD DQRVMPNFAE VYSFIGSVFD PKTTGHVQRL KQMDPINLET  240
VLLLMKNLSV NLSSPEFEEQ RRLISSYNSE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009119702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119702.10.0PREDICTED: protein REVEILLE 3
RefseqXP_013666318.10.0protein REVEILLE 3-like
RefseqXP_022548702.10.0protein REVEILLE 3-like
SwissprotQ6R0H01e-152RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A397XNJ20.0A0A397XNJ2_BRACM; Uncharacterized protein
TrEMBLM4EWS20.0M4EWS2_BRARP; Uncharacterized protein
STRINGBra033257.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-154MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]