PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118372.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family YABBY
Protein Properties Length: 188aa    MW: 21005.9 Da    PI: 10.1436
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118372.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY243.44.5e-7521642170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +++ ss++vCyv CnfC+t lavsvP++slf++vtvrCGhCt+lls+n+ ++ ++ +         +++l++ +++  ++++ ++  ++s s+++
  XP_009118372.1   2 SIDLSSDRVCYVLCNFCTTTLAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQSSPPPI-----HQDLQQPKQHIASSVTRKEWGSSSRSSNH 91 
                     67789*********************************************99887665552.....33344444444444444444445555555 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      s++lsen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP ishreafs+aaknWahfP+ihfgl
  XP_009118372.1  92 FSTTLSENVDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPAISHREAFSTAAKNWAHFPHIHFGL 164
                     556679**********99.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.3E-706164IPR006780YABBY protein
SuperFamilySSF470953.67E-7109157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-4113156IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSIDLSSDRV CYVLCNFCTT TLAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQSSPP  60
PIHQDLQQPK QHIASSVTRK EWGSSSRSSN HFSTTLSENV DREAPRMPPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKAGNPA ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA  180
GHKSNGYF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.230720.0leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118372.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118372.11e-140PREDICTED: putative axial regulator YABBY 2 isoform X1
RefseqXP_013716129.11e-140putative axial regulator YABBY 2 isoform X1
SwissprotQ9XFB01e-116YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A397YFZ41e-139A0A397YFZ4_BRACM; Uncharacterized protein
STRINGBo8g112450.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-111YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]