PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009118372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21005.9 Da PI: 10.1436 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 243.4 | 4.5e-75 | 2 | 164 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ ss++vCyv CnfC+t lavsvP++slf++vtvrCGhCt+lls+n+ ++ ++ + +++l++ +++ ++++ ++ ++s s+++ XP_009118372.1 2 SIDLSSDRVCYVLCNFCTTTLAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQSSPPPI-----HQDLQQPKQHIASSVTRKEWGSSSRSSNH 91 67789*********************************************99887665552.....33344444444444444444445555555 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++lsen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP ishreafs+aaknWahfP+ihfgl XP_009118372.1 92 FSTTLSENVDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPAISHREAFSTAAKNWAHFPHIHFGL 164 556679**********99.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.3E-70 | 6 | 164 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.67E-7 | 109 | 157 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.9E-4 | 113 | 156 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MSIDLSSDRV CYVLCNFCTT TLAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQSSPP 60 PIHQDLQQPK QHIASSVTRK EWGSSSRSSN HFSTTLSENV DREAPRMPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKAGNPA ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA 180 GHKSNGYF |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.23072 | 0.0 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009118372.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK353326 | 0.0 | AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118372.1 | 1e-140 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_013716129.1 | 1e-140 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 1e-116 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A397YFZ4 | 1e-139 | A0A397YFZ4_BRACM; Uncharacterized protein | ||||
STRING | Bo8g112450.1 | 1e-137 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-111 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|