PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117331.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 316aa    MW: 35107 Da    PI: 7.0374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12128174455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  XP_009117331.1 128 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKQLQ 174
                     5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-15124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15128187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10128174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-12129178No hitNo description
SMARTSM003534.2E-14130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEDSSFTDLM LDTDEYLIDD WESDFPVVPV ETTDHQGSGS ESGFMLIPER PTKQLKVNST  60
SSSPSSSSSS GSLTTPQVIS FGAPDPTMNL VETSFNFSNQ ANMNQNAGSK RKECGNNGGK  120
REPHLLKEHV LAERKRRQKL NERLIALSAL LPGLKKADKA SVLEDAIKHL KQLQERVKKL  180
EEERVGTKKM DQSVILVKRS QVYVEDDSSS YSSTCSAASP PSSSLDEVSI LKQTMPMIEA  240
RVSDRDLLIR IHCEKNKGCL VKILSSLEKF RLEVVNSFTL PFGSKTLVIT ILSKMDNKFS  300
RPIEDVVKNI RLALAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137ERKRRQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117331.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117331.10.0PREDICTED: transcription factor NAI1-like
SwissprotQ8S3F11e-160BH020_ARATH; Transcription factor NAI1
TrEMBLA0A3P5YS250.0A0A3P5YS25_BRACM; Uncharacterized protein
TrEMBLM4FFQ30.0M4FFQ3_BRARP; Uncharacterized protein
STRINGBra039927.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-159bHLH family protein
Publications ? help Back to Top
  1. Hakenjos JP, et al.
    ML3 is a NEDD8- and ubiquitin-modified protein.
    Plant Physiol., 2013. 163(1): p. 135-49
    [PMID:23903439]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoshii M,Yamamoto A,Kagaya Y,Takeda S,Hattori T
    The Arabidopsis transcription factor NAI1 is required for enhancing the active histone mark but not for removing the repressive mark on PYK10, a seedling-specific gene upon embryonic-to-postgerminative developmental phase transition.
    Plant Signal Behav, 2015. 10(12): p. e1105418
    [PMID:26479492]