PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116860.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 322aa    MW: 36934.7 Da    PI: 5.4432
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51111391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+++yL+kk+++ k++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk +
  XP_009116860.1  11 VPPGFRFHPTEEELLQYYLRKKISNIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKII 104
                     69****************************.9***************962433332455************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s +g  +g++ktLvfykgrap+g+k+dW+mheyrl
  XP_009116860.1 105 YS-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                     **.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-578176IPR003441NAC domain
PROSITE profilePS5100554.88511176IPR003441NAC domain
PfamPF023651.1E-2712139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKISNIKIDL DVIRDVDLNK LEPWDIQEMC  60
KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGDR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DNLLVSSSNL DDDVTLETCE VIGGDEGWVV CRVFMKKSLC  180
KTVNSSPPRS IKTPSFNEET IGQFLEVMEQ SCKEETILDP FLKLPNLECP NTVASYQRLM  240
DDQVSNCHVS KLVDPITSWA SLDRLVASQL NGPNSYYEIP QSPFHGLNRP GYFNTGLTPD  300
YYIPEMDVWN DTDFGRTTPS SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-47817814167NO APICAL MERISTEM PROTEIN
1ut4_B8e-47817814167NO APICAL MERISTEM PROTEIN
1ut7_A8e-47817814167NO APICAL MERISTEM PROTEIN
1ut7_B8e-47817814167NO APICAL MERISTEM PROTEIN
3swm_A9e-47817817170NAC domain-containing protein 19
3swm_B9e-47817817170NAC domain-containing protein 19
3swm_C9e-47817817170NAC domain-containing protein 19
3swm_D9e-47817817170NAC domain-containing protein 19
3swp_A9e-47817817170NAC domain-containing protein 19
3swp_B9e-47817817170NAC domain-containing protein 19
3swp_C9e-47817817170NAC domain-containing protein 19
3swp_D9e-47817817170NAC domain-containing protein 19
4dul_A8e-47817814167NAC domain-containing protein 19
4dul_B8e-47817814167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in anthers. Also present in pollen, base of siliques and inflorescence stems. {ECO:0000269|PubMed:16214898}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00015PBMTransfer from AT3G61910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116860.10.0PREDICTED: NAC domain-containing protein 66
RefseqXP_013660012.10.0NAC domain-containing protein 66
SwissprotQ9M2740.0NAC66_ARATH; NAC domain-containing protein 66
TrEMBLA0A078FEG20.0A0A078FEG2_BRANA; BnaA09g39480D protein
TrEMBLA0A397Y9N90.0A0A397Y9N9_BRACM; Uncharacterized protein
TrEMBLM4CTU60.0M4CTU6_BRARP; Uncharacterized protein
STRINGBra007640.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77828124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.10.0NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]