PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116494.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 572aa    MW: 64866 Da    PI: 6.6711
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-14860248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     + W+t+E++ll++av+++G ++W+++a+++        ++t+ +c++++++++
   XP_009116494.1  8 QTWSTWEELLLACAVHRHGVDSWDSVAAEIHkqnsssRTLTASECRHKYNDLK 60
                     78************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.9E-9662IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-6663IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-5761IPR009057Homeodomain-like
PfamPF002496.1E-14860IPR001005SANT/Myb domain
CDDcd001671.16E-6960No hitNo description
PROSITE profilePS500906.471060IPR017877Myb-like domain
SMARTSM002971.7E-12242353IPR001487Bromodomain
PROSITE profilePS5001412.761245334IPR001487Bromodomain
CDDcd043695.88E-16249348No hitNo description
SuperFamilySSF473705.89E-17252350IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.0E-14255367IPR001487Bromodomain
PfamPF004397.6E-10257337IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MAKPETHQTW STWEELLLAC AVHRHGVDSW DSVAAEIHKQ NSSSRTLTAS ECRHKYNDLK  60
RRFSPEGETV SEISWWLEEL RKLRVDELRR EVERYDQSIS SLQMKVKRLE DEREKEEAEK  120
VTESPDLVKI TETVNKSDVP VIEQPNREID ESIEEIANRI GGDEIETDEK PVREDSGRGS  180
CGSVGKDSER GDSVREGNDD SPELKGEEEV KETSDVQSSA SLPRKEESVG HDQPDNEDQS  240
LAVNKTLVKS RPFIEFIEML CSHPIGSHFS RRLESQLQET PEYERIIRQH IDFDLIRTRV  300
DEGYYESSKT KFHRDLLLLI NNAKVFYGER SPDSNSATQL HELIKKQMTT LKTSNQTSPP  360
KDEPLVEEPT LLSLKTKVSV SVKACRKRSS LAVRSSTEPV KKKTNIVPTT DENENEKKQV  420
SETEEEEETT TDKDEEPIVS KKTPRGRTTT SSAKKIGTRN VVKTSLDDEQ KKSDQEKKSK  480
TTTNAVSKKQ SAASFLKRMK GAETVVETVK DDSSSGKKGA EQRRSNTKHE KAVAGQKRTT  540
PAKRNTSAAS KREASEKEEG SSTRPKKRTR RL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116494.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3616285e-40AF361628.1 Arabidopsis thaliana AT3g57980/T10K17_190 mRNA, complete cds.
GenBankAL1329775e-40AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBankAY1131655e-40AY113165.1 Arabidopsis thaliana AT3g57980/T10K17_190 mRNA, complete cds.
GenBankCP0026865e-40CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116494.10.0PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1
TrEMBLM4CT290.0M4CT29_BRARP; Uncharacterized protein
STRINGBra007371.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.11e-166DNA-binding bromodomain-containing protein