PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116138.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 384aa    MW: 42177.7 Da    PI: 6.2781
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.58.1e-15234289358
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                     ++kr+rr+ +NRe+ArrsR+RK++++ e  + v +L ae ++L  +l  +++++++
  XP_009116138.1 234 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVNQLRAEHSTLLGRLGDMNQKYDA 289
                     68******************************************888877777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-17232296IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-10233286No hitNo description
PROSITE profilePS5021710.726234288IPR004827Basic-leucine zipper domain
PfamPF001705.1E-12235288IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.42E-10236286No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
PfamPF124982.1E-10303339IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MHIVFSVDDL TDSFWPPPPP EPSPGSVPSQ NMPDGMTRSQ SEWAFQRLLR EMSGSDESPT  60
TINVRSPPPV QSEQSLSTVD ETADVVEIQK PPPPPPRNPA DDQGNRDRAR SASDPLDSDC  120
VDPNQYHAIL KSKLEIACAA VARRVGAVKP EDSSASGVNQ KLSPPVGSPA QGSVVVAQTS  180
PGASSVRSIP STSVKRKPDV VPARQTTSIS SRDDSDDDDL DGDMETADNG DPTDVKRARR  240
MLSNRESARR SRRRKQEQMN EFDTQVNQLR AEHSTLLGRL GDMNQKYDAA AVDNRILRAD  300
IETLRTKVKM AEETVKRVTG VNPLQWGRPN MGMPVNNTPR IPSTTGAGSA PNQRVEVNRE  360
GLQNQFATNP KNMYETMPHW NHKH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248255RRSRRRKQ
2250255SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.55200.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in seeds at early stages of development, mostly in embryo and, at lower extent, in the endosperm. Accumulates and peaks at maturation. Fade out during late seed development steps, restricted to the inner layer of the seed coat, and, at very low levels, in the mature embryo and the remaining endosperm. Also present in the lignified inner subepidermal layer of the valves. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, stems, leaves, stipulae, siliques, seeds, pollen, and flowers. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:18841482}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116138.10.0PREDICTED: basic leucine zipper 25
SwissprotQ9M1G61e-154BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A397YB290.0A0A397YB29_BRACM; Uncharacterized protein
TrEMBLM4CS910.0M4CS91_BRARP; Uncharacterized protein
STRINGBra007083.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.11e-142basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]